slib.sml.sm.core.measures.graph.pairwise.dag.hybrid.utils
Class SimDagHybridUtils

java.lang.Object
  extended by slib.sml.sm.core.measures.graph.pairwise.dag.hybrid.utils.SimDagHybridUtils

public class SimDagHybridUtils
extends Object

Author:
seb

Constructor Summary
SimDagHybridUtils()
           
 
Method Summary
 HashMap<org.openrdf.model.URI,Double> computeSemanticContribution_Wang_2007(org.openrdf.model.URI v, Set<org.openrdf.model.URI> ancestors, slib.sglib.model.graph.G g, Set<org.openrdf.model.URI> setEdgeTypes, slib.sglib.model.graph.weight.GWS ws)
          Compute the Semantic contribution for all ancestors of a node Semantic Contribution was defined by Wang et al.
 double computeSV_Wang_2007(Map<org.openrdf.model.URI,Double> sc)
          Compute the Semantic Value of a node considering all semantic contribution Semantic Value (SV) was defined by Wang et al.
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

SimDagHybridUtils

public SimDagHybridUtils()
Method Detail

computeSemanticContribution_Wang_2007

public HashMap<org.openrdf.model.URI,Double> computeSemanticContribution_Wang_2007(org.openrdf.model.URI v,
                                                                                   Set<org.openrdf.model.URI> ancestors,
                                                                                   slib.sglib.model.graph.G g,
                                                                                   Set<org.openrdf.model.URI> setEdgeTypes,
                                                                                   slib.sglib.model.graph.weight.GWS ws)
Compute the Semantic contribution for all ancestors of a node Semantic Contribution was defined by Wang et al. 2007

Parameters:
v -
ancestors -
g -
setEdgeTypes -
Returns:
See Also:
JZ, Du Z, Payattakool R, Yu PS, Chen C-F: A new method to measure the semantic similarity of GO terms. Bioinformatics (Oxford, England) 2007, 23:1274-81.

computeSV_Wang_2007

public double computeSV_Wang_2007(Map<org.openrdf.model.URI,Double> sc)
Compute the Semantic Value of a node considering all semantic contribution Semantic Value (SV) was defined by Wang et al. 2007 page 1276

Parameters:
sc -
Returns:
double semantic value
See Also:
JZ, Du Z, Payattakool R, Yu PS, Chen C-F: A new method to measure the semantic similarity of GO terms. Bioinformatics (Oxford, England) 2007, 23:1274-81.


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