A B C D E F G H I K L M N O P R S T V

A

acceptedAggregations - Static variable in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental.Sim_pairwise_DAG_node_Harispe_2013
 
acceptedMeasures - Static variable in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental.Sim_pairwise_DAG_node_Harispe_2013
 
addParam(String, Object) - Method in class slib.sml.sm.core.utils.SMconf
Add the parameter to the configuration Override existing parameter if one exists.
aggregation_lca - Static variable in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental.Sim_pairwise_DAG_node_Harispe_2013
 
alpha_param_name - Static variable in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental.Sim_pairwise_DAG_node_Schlicker_Tversky_SimRel
 
alpha_param_name - Static variable in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_Tversky_IC
 

B

BATCH_LIMIT - Static variable in class slib.sml.smutils.SQLiteUtils
 
BATCH_LIMIT_MATRIX_LINE - Static variable in class slib.sml.smutils.SQLiteUtils
 
beta_param_name - Static variable in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental.Sim_pairwise_DAG_node_GL_GraSM
 
beta_param_name - Static variable in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental.Sim_pairwise_DAG_node_Schlicker_GL_SimRel
 
beta_param_name - Static variable in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental.Sim_pairwise_DAG_node_Schlicker_Tversky_SimRel
 
beta_param_name - Static variable in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_GL
 
beta_param_name - Static variable in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_Tversky_IC
 

C

className - Variable in class slib.sml.sm.core.metrics.ic.utils.ICconf
Class name of the computation method.
className - Variable in class slib.sml.sm.core.utils.SMconf
The name of the class associated to the semantic measures method the configuration is linked to.
clearCache() - Method in class slib.sml.sm.core.engine.SMProxResultStorage
 
compute(Map<URI, Integer>) - Method in class slib.sml.sm.core.metrics.ic.annot.IC_annot_resnik_1995
 
compute(IC_Conf_Corpus, SM_Engine) - Method in class slib.sml.sm.core.metrics.ic.annot.IC_annot_resnik_1995
 
compute(Map<URI, Integer>) - Method in class slib.sml.sm.core.metrics.ic.annot.IC_annot_resnik_1995_Normalized
 
compute(IC_Conf_Corpus, SM_Engine) - Method in class slib.sml.sm.core.metrics.ic.annot.IC_annot_resnik_1995_Normalized
 
compute(Map<URI, Integer>) - Method in class slib.sml.sm.core.metrics.ic.annot.IC_probOccurence_propagatted
 
compute(IC_Conf_Corpus, SM_Engine) - Method in class slib.sml.sm.core.metrics.ic.annot.IC_probOccurence_propagatted
 
compute(IC_Conf_Corpus, SM_Engine) - Method in interface slib.sml.sm.core.metrics.ic.annot.ICcorpus
 
compute(ICconf, SM_Engine) - Method in interface slib.sml.sm.core.metrics.ic.IC
 
compute(IC_Conf_Topo, SM_Engine) - Method in class slib.sml.sm.core.metrics.ic.topo.ICi_ancestors_norm
 
compute(Map<URI, Integer>) - Method in class slib.sml.sm.core.metrics.ic.topo.ICi_depth_max_nonlinear
 
compute(IC_Conf_Topo, SM_Engine) - Method in class slib.sml.sm.core.metrics.ic.topo.ICi_depth_max_nonlinear
 
compute(Map<URI, Integer>) - Method in class slib.sml.sm.core.metrics.ic.topo.ICi_depth_min_nonlinear
 
compute(IC_Conf_Topo, SM_Engine) - Method in class slib.sml.sm.core.metrics.ic.topo.ICi_depth_min_nonlinear
 
compute(Map<URI, Integer>, Map<URI, Integer>) - Method in class slib.sml.sm.core.metrics.ic.topo.ICi_harispe_2012
 
compute(double, double, double) - Method in class slib.sml.sm.core.metrics.ic.topo.ICi_harispe_2012
 
compute(IC_Conf_Topo, SM_Engine) - Method in class slib.sml.sm.core.metrics.ic.topo.ICi_harispe_2012
 
compute(Map<URI, Integer>) - Method in class slib.sml.sm.core.metrics.ic.topo.ICi_probOccurence
 
compute(IC_Conf_Topo, SM_Engine) - Method in class slib.sml.sm.core.metrics.ic.topo.ICi_probOccurence
 
compute(Map<URI, Integer>) - Method in class slib.sml.sm.core.metrics.ic.topo.ICi_probOccurence_propagatted
 
compute(IC_Conf_Topo, SM_Engine) - Method in class slib.sml.sm.core.metrics.ic.topo.ICi_probOccurence_propagatted
 
compute(Map<URI, Integer>) - Method in class slib.sml.sm.core.metrics.ic.topo.ICi_resnik_1995
 
compute(IC_Conf_Topo, SM_Engine) - Method in class slib.sml.sm.core.metrics.ic.topo.ICi_resnik_1995
 
compute(Map<URI, Integer>) - Method in class slib.sml.sm.core.metrics.ic.topo.ICi_resnik_unpropagatted_1995
 
compute(IC_Conf_Topo, SM_Engine) - Method in class slib.sml.sm.core.metrics.ic.topo.ICi_resnik_unpropagatted_1995
 
compute(Map<URI, Integer>, Map<URI, Integer>) - Method in class slib.sml.sm.core.metrics.ic.topo.ICi_sanchez_2011_a
 
compute(IC_Conf_Topo, SM_Engine) - Method in class slib.sml.sm.core.metrics.ic.topo.ICi_sanchez_2011_a
 
compute(Map<URI, Integer>) - Method in class slib.sml.sm.core.metrics.ic.topo.ICi_sanchez_2011_b
 
compute(IC_Conf_Topo, SM_Engine) - Method in class slib.sml.sm.core.metrics.ic.topo.ICi_sanchez_2011_b
 
compute(Map<URI, Set<URI>>) - Method in class slib.sml.sm.core.metrics.ic.topo.ICi_seco_2004
Compute the Information contents of the vertices specified in the given stack.
compute(IC_Conf_Topo, SM_Engine) - Method in class slib.sml.sm.core.metrics.ic.topo.ICi_seco_2004
 
compute(Map<URI, Integer>, Map<URI, Set<URI>>) - Method in class slib.sml.sm.core.metrics.ic.topo.ICi_zhou_2008
Compute the IC for each vertices expressed in the given result stack.
compute(IC_Conf_Topo, SM_Engine) - Method in class slib.sml.sm.core.metrics.ic.topo.ICi_zhou_2008
 
compute(IC_Conf_Topo, SM_Engine) - Method in interface slib.sml.sm.core.metrics.ic.topo.ICtopo
Compute the topological Information Content for the vertices contained by the graph associated to the given engine.
compute(Map<URI, Integer>, int) - Static method in class slib.sml.sm.core.metrics.ic.utils.ProbOccurence
 
compute(IC_Conf_Topo, SM_Engine) - Method in class slib.sml.sm.core.metrics.ic.utils.ProbOccurence
 
compute(SM_Engine) - Static method in class slib.sml.sm.core.metrics.vector.VectorWeight_Chabalier_2007
 
compute(SM_Engine) - Static method in class slib.sml.sm.core.metrics.vector.VectorWeight_Chabalier_Propaggated
 
computeGroupwiseAddOnSim(SMconf, SMconf, Set<URI>, Set<URI>) - Method in class slib.sml.sm.core.engine.SM_Engine
Compute the indirect group wise semantic measure score considering the two set of vertices and the semantic measure configuration.
computeGroupwiseStandaloneSim(SMconf, Set<URI>, Set<URI>) - Method in class slib.sml.sm.core.engine.SM_Engine
Compute the direct group wise semantic measure score considering the two set of vertices and the semantic measure configuration.
computeIC(ICconf) - Method in class slib.sml.sm.core.engine.SM_Engine
Compute the information content for all classes.
computeIC(double, double) - Method in class slib.sml.sm.core.metrics.ic.topo.ICi_seco_2004
Compute the IC considering the given parameters.
computePairwiseSim(SMconf, URI, URI) - Method in class slib.sml.sm.core.engine.SM_Engine
Compute the pairwise semantic measures score considering the two vertices and the semantic measure configuration.
computeSemanticContribution_Wang_2007(URI, Set<URI>, G, Set<URI>, GWS) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.hybrid.utils.SimDagHybridUtils
Compute the Semantic contribution for all ancestors of a node Semantic Contribution was defined by Wang et al.
computeSV_Wang_2007(Map<URI, Double>) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.hybrid.utils.SimDagHybridUtils
Compute the Semantic Value of a node considering all semantic contribution Semantic Value (SV) was defined by Wang et al.
copyTable(String, String, String, String) - Method in class slib.sml.smutils.SQLiteUtils
Copy a table.
createTableDB(String, String, String) - Method in class slib.sml.smutils.SQLiteUtils
Create a SQLlite database from a tabular file.

D

distance(String, String) - Method in class slib.sml.sm.core.measures.string.LevenshteinDistance
 
dropColumns(String, String, Set<String>) - Method in class slib.sml.smutils.SQLiteUtils
Drop specified columns from the table
dropTable(String, String) - Method in class slib.sml.smutils.SQLiteUtils
Drop a table from a database

E

equals(Object) - Method in class slib.sml.sm.core.metrics.ic.utils.ICconf
 

F

flag - Variable in class slib.sml.sm.core.metrics.ic.utils.ICconf
Flag corresponding to the IC computation method.
flag - Variable in class slib.sml.sm.core.utils.OperatorConf
the flag associated to the configuration.
flag - Variable in class slib.sml.sm.core.utils.SMconf
The flag corresponding to the type of measure associated to the configuration.
FLAG_DIST_PAIRWISE_DAG_NODE_JIANG_CONRATH_1997 - Static variable in class slib.sml.sm.core.utils.SMConstants
 
FLAG_IC_ANNOT_RESNIK_1995 - Static variable in class slib.sml.sm.core.utils.SMConstants
 
FLAG_IC_ANNOT_RESNIK_1995_NORMALIZED - Static variable in class slib.sml.sm.core.utils.SMConstants
 
FLAG_IC_IDF - Static variable in class slib.sml.sm.core.utils.SMConstants
 
FLAG_IC_PROB_OCCURENCE_PROPAGATED - Static variable in class slib.sml.sm.core.utils.SMConstants
 
FLAG_ICI_ANCESTORS_NORM - Static variable in class slib.sml.sm.core.utils.SMConstants
 
FLAG_ICI_DEPTH_MAX_NONLINEAR - Static variable in class slib.sml.sm.core.utils.SMConstants
 
FLAG_ICI_DEPTH_MIN_NONLINEAR - Static variable in class slib.sml.sm.core.utils.SMConstants
 
FLAG_ICI_HARISPE_2012 - Static variable in class slib.sml.sm.core.utils.SMConstants
 
FLAG_ICI_MAZANDU_2012 - Static variable in class slib.sml.sm.core.utils.SMConstants
 
FLAG_ICI_PROB_OCCURENCE - Static variable in class slib.sml.sm.core.utils.SMConstants
 
FLAG_ICI_PROB_OCCURENCE_PROPAGATED - Static variable in class slib.sml.sm.core.utils.SMConstants
 
FLAG_ICI_RESNIK_1995 - Static variable in class slib.sml.sm.core.utils.SMConstants
 
FLAG_ICI_RESNIK_UNPROPAGATED_1995 - Static variable in class slib.sml.sm.core.utils.SMConstants
 
FLAG_ICI_SANCHEZ_2011_a - Static variable in class slib.sml.sm.core.utils.SMConstants
 
FLAG_ICI_SANCHEZ_2011_b - Static variable in class slib.sml.sm.core.utils.SMConstants
 
FLAG_ICI_SECO_2004 - Static variable in class slib.sml.sm.core.utils.SMConstants
 
FLAG_ICI_ZHOU_2008 - Static variable in class slib.sml.sm.core.utils.SMConstants
 
FLAG_SIM_GROUPWISE_AVERAGE - Static variable in class slib.sml.sm.core.utils.SMConstants
 
FLAG_SIM_GROUPWISE_AVERAGE_NORMALIZED_GOSIM - Static variable in class slib.sml.sm.core.utils.SMConstants
 
FLAG_SIM_GROUPWISE_BMA - Static variable in class slib.sml.sm.core.utils.SMConstants
 
FLAG_SIM_GROUPWISE_BMM - Static variable in class slib.sml.sm.core.utils.SMConstants
 
FLAG_SIM_GROUPWISE_DAG_ALI_DEANE - Static variable in class slib.sml.sm.core.utils.SMConstants
 
FLAG_SIM_GROUPWISE_DAG_GIC - Static variable in class slib.sml.sm.core.utils.SMConstants
 
FLAG_SIM_GROUPWISE_DAG_LEE_2004 - Static variable in class slib.sml.sm.core.utils.SMConstants
 
FLAG_SIM_GROUPWISE_DAG_LP - Static variable in class slib.sml.sm.core.utils.SMConstants
 
FLAG_SIM_GROUPWISE_DAG_NTO - Static variable in class slib.sml.sm.core.utils.SMConstants
 
FLAG_SIM_GROUPWISE_DAG_NTO_MAX - Static variable in class slib.sml.sm.core.utils.SMConstants
 
FLAG_SIM_GROUPWISE_DAG_TO - Static variable in class slib.sml.sm.core.utils.SMConstants
 
FLAG_SIM_GROUPWISE_DAG_UI - Static variable in class slib.sml.sm.core.utils.SMConstants
 
FLAG_SIM_GROUPWISE_MAX - Static variable in class slib.sml.sm.core.utils.SMConstants
 
FLAG_SIM_GROUPWISE_MAX_NORMALIZED_GOSIM - Static variable in class slib.sml.sm.core.utils.SMConstants
 
FLAG_SIM_GROUPWISE_MIN - Static variable in class slib.sml.sm.core.utils.SMConstants
 
FLAG_SIM_GROUPWISE_SVM - Static variable in class slib.sml.sm.core.utils.SMConstants
 
FLAG_SIM_PAIRWISE_DAG_NODE_GL - Static variable in class slib.sml.sm.core.utils.SMConstants
 
FLAG_SIM_PAIRWISE_DAG_NODE_GL_GRASM - Static variable in class slib.sml.sm.core.utils.SMConstants
 
FLAG_SIM_PAIRWISE_DAG_NODE_HARISPE_2013 - Static variable in class slib.sml.sm.core.utils.SMConstants
 
FLAG_SIM_PAIRWISE_DAG_NODE_JACCARD_3W_IC - Static variable in class slib.sml.sm.core.utils.SMConstants
 
FLAG_SIM_PAIRWISE_DAG_NODE_JACCARD_IC - Static variable in class slib.sml.sm.core.utils.SMConstants
 
FLAG_SIM_PAIRWISE_DAG_NODE_JIANG_CONRATH_1997_NORM - Static variable in class slib.sml.sm.core.utils.SMConstants
 
FLAG_SIM_PAIRWISE_DAG_NODE_LIN_1998 - Static variable in class slib.sml.sm.core.utils.SMConstants
 
FLAG_SIM_PAIRWISE_DAG_NODE_LIN_1998_GRASM - Static variable in class slib.sml.sm.core.utils.SMConstants
 
FLAG_SIM_PAIRWISE_DAG_NODE_MAZANDU_2012 - Static variable in class slib.sml.sm.core.utils.SMConstants
 
FLAG_SIM_PAIRWISE_DAG_NODE_RESNIK_1995 - Static variable in class slib.sml.sm.core.utils.SMConstants
 
FLAG_SIM_PAIRWISE_DAG_NODE_RESNIK_1995_ANCESTORS - Static variable in class slib.sml.sm.core.utils.SMConstants
 
FLAG_SIM_PAIRWISE_DAG_NODE_RESNIK_1995_DESCENDANTS - Static variable in class slib.sml.sm.core.utils.SMConstants
 
FLAG_SIM_PAIRWISE_DAG_NODE_RESNIK_1995_GRASM - Static variable in class slib.sml.sm.core.utils.SMConstants
 
FLAG_SIM_PAIRWISE_DAG_NODE_SCHLICKER_2006 - Static variable in class slib.sml.sm.core.utils.SMConstants
 
FLAG_SIM_PAIRWISE_DAG_NODE_SCHLICKER_3WJACCARD - Static variable in class slib.sml.sm.core.utils.SMConstants
 
FLAG_SIM_PAIRWISE_DAG_NODE_SCHLICKER_GL - Static variable in class slib.sml.sm.core.utils.SMConstants
 
FLAG_SIM_PAIRWISE_DAG_NODE_SCHLICKER_JACCARD - Static variable in class slib.sml.sm.core.utils.SMConstants
 
FLAG_SIM_PAIRWISE_DAG_NODE_SCHLICKER_TVERSKY - Static variable in class slib.sml.sm.core.utils.SMConstants
 
FLAG_SIM_PAIRWISE_DAG_NODE_SIM_IC_2010 - Static variable in class slib.sml.sm.core.utils.SMConstants
 
FLAG_SIM_PAIRWISE_DAG_NODE_TVERSKY_IC - Static variable in class slib.sml.sm.core.utils.SMConstants
 
flushTableInFile(String, String, String) - Method in class slib.sml.smutils.SQLiteUtils
Flush a table in a tabular file The first two columns are considered as literal, the others as Double values The number of tuples load into memory before flushing are governed by BATCH_LIMIT_MATRIX_LINE

G

getAllAncestorsInc() - Method in class slib.sml.sm.core.engine.SM_Engine
Access to the inclusive ancestors for all classes.
getAllDescendantsInc() - Method in class slib.sml.sm.core.engine.SM_Engine
Access to a view of the inclusive descendants for all classes.
getAllNbAncestorsInc() - Method in class slib.sml.sm.core.engine.SM_Engine
Inclusive process
getAllNbDescendantsInc() - Method in class slib.sml.sm.core.engine.SM_Engine
Compute the number of inclusive descendants for all classes
getAllNbReachableLeaves() - Method in class slib.sml.sm.core.engine.SM_Engine
Compute for each class x the number classes which are leaves which are subsumed by x.
getAllShortestPath(URI, GWS) - Method in class slib.sml.sm.core.engine.SM_Engine
CACHED
getAncestorEngine() - Method in class slib.sml.sm.core.engine.SM_Engine
 
getAncestorsInc(Set<URI>) - Method in class slib.sml.sm.core.engine.SM_Engine
Compute the union of the inclusive ancestors of a set of classes.
getAncestorsInc(URI) - Method in class slib.sml.sm.core.engine.SM_Engine
Give access to a view of the inclusive ancestors of a class.
getBATCH_LIMIT() - Method in class slib.sml.smutils.SQLiteUtils
 
getBATCH_LIMIT_MATRIX_LINE() - Method in class slib.sml.smutils.SQLiteUtils
 
getClasses() - Method in class slib.sml.sm.core.engine.SM_Engine
Access to the set of URI of the graph considered as classes.
getClassName() - Method in class slib.sml.sm.core.metrics.ic.utils.ICconf
Getter of the class name.
getDescendantEngine() - Method in class slib.sml.sm.core.engine.SM_Engine
 
getDescendantsInc(URI) - Method in class slib.sml.sm.core.engine.SM_Engine
Give access to a view of the inclusive descendants of a class.
getFlag() - Method in class slib.sml.sm.core.metrics.ic.utils.ICconf
Getter of the flag.
getGraph() - Method in class slib.sml.sm.core.engine.SM_Engine
Access to the graph associated to the engine.
getHypoAncEx(URI, URI) - Method in class slib.sml.sm.core.engine.SM_Engine
NOT_CACHED
getIC(ICconf, URI) - Method in class slib.sml.sm.core.engine.SM_Engine
Get the Information Content of a class.
getIC_MICA(ICconf, URI, URI) - Method in class slib.sml.sm.core.engine.SM_Engine
Get the information content of the most informative common ancestor (MICA) of two classes.
getIC_results(ICconf) - Method in class slib.sml.sm.core.engine.SM_Engine
Access to a view of the information content of all classes.
getICconf() - Method in class slib.sml.sm.core.utils.SMconf
The IC configuration associated to the configuration.
getId() - Method in class slib.sml.sm.core.metrics.ic.utils.ICconf
Getter of the id.
getInfo(String) - Method in class slib.sml.smutils.SQLiteUtils
Return info a specified database
getInfo(String, String) - Method in class slib.sml.smutils.SQLiteUtils
Return info a specified table
getInstances() - Method in class slib.sml.sm.core.engine.SM_Engine
Access to the set of URI of the graph considered as instances.
getK() - Method in class slib.sml.sm.core.measures.graph.framework.dag.Sim_Framework_DAG_Set_Knappe_2004
 
getK() - Method in class slib.sml.sm.core.measures.graph.framework.dag.Sim_Framework_DAG_Set_Tversky_1977
 
getLabel() - Method in class slib.sml.sm.core.metrics.ic.utils.ICconf
Getter of the label.
getLCAs(URI, URI) - Method in class slib.sml.sm.core.engine.SM_Engine
 
getLCAs(G, URI, URI) - Method in interface slib.sml.sm.core.utils.LCAFinder
Compute the set of Disjoint Common Ancestors of a pair of concepts The processed graph do not require to be transitively reduced.
getLCAs(G, URI, URI) - Method in class slib.sml.sm.core.utils.LCAFinderImpl
 
getLine(boolean, Long) - Method in class slib.sml.smutils.ResultsMerger
 
getLogBase() - Method in class slib.sml.sm.core.metrics.utils.LogBasedMetric
 
getLogBase() - Method in interface slib.sml.sm.core.metrics.utils.LogBasedMetricInterface
Getter of the log base associated to the metric.
getMatrixScore(Set<URI>, Set<URI>, SMconf) - Method in class slib.sml.sm.core.engine.SM_Engine
Compute the matrix of similarity for two sets of vertex/concepts/classes.
getMaxDepth() - Method in class slib.sml.sm.core.engine.SM_Engine
Access to the maximal depth of a class in the underlying taxonomic graph.
getMaxDepths() - Method in class slib.sml.sm.core.engine.SM_Engine
Give access to a view of the maximal depth of all classes.
getMICA(ICconf, URI, URI) - Method in class slib.sml.sm.core.engine.SM_Engine
Get the most informative common ancestor (MICA) of two classes.
getMinDepths() - Method in class slib.sml.sm.core.engine.SM_Engine
Give access to a view of the minimal depth of all classes.
getMinStrictPositiveDouble(Map<X, Double>) - Static method in class slib.sml.sm.core.utils.SMutils
Return the minimal positive value amon the values of the map (0 excluded)
getMSA(URI, URI, GWS) - Method in class slib.sml.sm.core.engine.SM_Engine
NOT_CACHED
getMSA_pekar_staab(URI, Map<URI, Double>, Map<URI, Double>, Set<URI>, Set<URI>, Dijkstra) - Static method in class slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.utils.SimDagEdgeUtils
Compute the most specific ancestor considering Pekar and Staab 2002 formula to minimize i.e.
getNbInstancesInferredPropFromCorpus() - Method in class slib.sml.sm.core.engine.SM_Engine
 
getNbOccurrenceProp() - Method in class slib.sml.sm.core.engine.SM_Engine
Topological propagation considering one occurrence per term
getnbPathLeadingToAllVertex() - Method in class slib.sml.sm.core.engine.SM_Engine
 
getP_MICA(ICconf, URI, URI) - Method in class slib.sml.sm.core.engine.SM_Engine
 
getPairwise_measure_id() - Method in class slib.sml.sm.core.utils.SMconf
Getter of the pairwise Id
getPairwiseApproach(String) - Static method in class slib.sml.sm.core.utils.SMConstants
Return the id of the approach associated to the semantic measure flag
getParents(URI) - Method in class slib.sml.sm.core.engine.SM_Engine
Get the parents of a class, that is to say its direct ancestors.
getReachableLeaves() - Method in class slib.sml.sm.core.engine.SM_Engine
Compute for each class x the classes which are leaves which are subsumed by x.
getRoot() - Method in class slib.sml.sm.core.engine.SM_Engine
Get the root of the taxonomic graph contained in the graph associated to the engine.
getShortestPath(URI, URI, GWS) - Method in class slib.sml.sm.core.engine.SM_Engine
CACHED ! Be careful modification of RelTypes requires cache clearing
getTaxonomicLeaves() - Method in class slib.sml.sm.core.engine.SM_Engine
Access to a view of the set of leaves of the underlying taxonomic graph.
getVector(Set<URI>, SMconf) - Method in class slib.sml.sm.core.engine.SM_Engine
 
getWeightingScheme(String) - Method in class slib.sml.sm.core.engine.SM_Engine
TODO store the weighting scheme in a Map Provide a way to load edge weight from file or to compute them using specific methods
GROUPWISE_MEASURE_FLAGS - Static variable in class slib.sml.sm.core.utils.SMConstants
 
groupwiseClassName(String) - Static method in class slib.sml.sm.core.utils.SMConstants
Return the class Name of the given groupwise semantic measure flag
groupwiseMeasureMapping - Static variable in class slib.sml.sm.core.utils.SMConstants
 

H

hashCode() - Method in class slib.sml.sm.core.metrics.ic.utils.ICconf
 

I

IC - Interface in slib.sml.sm.core.metrics.ic
Interface defining the methods representing an IC computer.
ic - Variable in class slib.sml.sm.core.utils.OperatorConf
the IC configuration associated to the operator configuration.
IC_annot_resnik_1995 - Class in slib.sml.sm.core.metrics.ic.annot
Original IC definition
IC_annot_resnik_1995() - Constructor for class slib.sml.sm.core.metrics.ic.annot.IC_annot_resnik_1995
 
IC_ANNOT_RESNIK_1995 - Static variable in class slib.sml.sm.core.utils.SMConstants
 
IC_annot_resnik_1995_Normalized - Class in slib.sml.sm.core.metrics.ic.annot
ICi_resnik_1995 TODO Add resnik citation p(c) defined as number of top down fashion path leading to c from the reachable leaves from c + 1 max_pc = max p(c) for all concepts.
IC_annot_resnik_1995_Normalized() - Constructor for class slib.sml.sm.core.metrics.ic.annot.IC_annot_resnik_1995_Normalized
 
IC_ANNOT_RESNIK_1995_NORMALIZED - Static variable in class slib.sml.sm.core.utils.SMConstants
 
IC_Conf_Corpus - Class in slib.sml.sm.core.metrics.ic.utils
Class used to represent configurations dedicated to Corpus-based IC.
IC_Conf_Corpus(String) - Constructor for class slib.sml.sm.core.metrics.ic.utils.IC_Conf_Corpus
Build an instance of IC configuration.
IC_Conf_Corpus(String, String) - Constructor for class slib.sml.sm.core.metrics.ic.utils.IC_Conf_Corpus
Build an instance of IC configuration.
IC_Conf_Corpus(String, String, String) - Constructor for class slib.sml.sm.core.metrics.ic.utils.IC_Conf_Corpus
Build an instance of the configuration considering the given parameters.
IC_Conf_Topo - Class in slib.sml.sm.core.metrics.ic.utils
 
IC_Conf_Topo(String, String, String) - Constructor for class slib.sml.sm.core.metrics.ic.utils.IC_Conf_Topo
 
IC_Conf_Topo(String) - Constructor for class slib.sml.sm.core.metrics.ic.utils.IC_Conf_Topo
 
IC_Conf_Topo(String, String) - Constructor for class slib.sml.sm.core.metrics.ic.utils.IC_Conf_Topo
Build an instance of IC configuration.
IC_FLAGS - Static variable in class slib.sml.sm.core.utils.SMConstants
 
IC_PROB - Static variable in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_Constants
 
IC_PROB_OCCURENCE_PROPAGATED - Static variable in class slib.sml.sm.core.utils.SMConstants
 
IC_probOccurence_propagatted - Class in slib.sml.sm.core.metrics.ic.annot
 
IC_probOccurence_propagatted() - Constructor for class slib.sml.sm.core.metrics.ic.annot.IC_probOccurence_propagatted
 
ICconf - Class in slib.sml.sm.core.metrics.ic.utils
 
ICconf(String) - Constructor for class slib.sml.sm.core.metrics.ic.utils.ICconf
Builder of the IC configuration.
ICconf(String, String, String) - Constructor for class slib.sml.sm.core.metrics.ic.utils.ICconf
Advanced builder of an instance of IC configuration.
icConf - Variable in class slib.sml.sm.core.utils.SMconf
The configuration of the Information Content metric associated to the measure.
ICcorpus - Interface in slib.sml.sm.core.metrics.ic.annot
 
ICi_ancestors_norm - Class in slib.sml.sm.core.metrics.ic.topo
Basic definition of an estimator of specificity based on the number of ancestors.
ICi_ancestors_norm() - Constructor for class slib.sml.sm.core.metrics.ic.topo.ICi_ancestors_norm
 
ICI_ANCESTORS_NORM - Static variable in class slib.sml.sm.core.utils.SMConstants
 
ICi_depth_max_nonlinear - Class in slib.sml.sm.core.metrics.ic.topo
Zhou Z, Wang Y, Gu J: A New Model of Information Content for Semantic Similarity in WordNet.
ICi_depth_max_nonlinear() - Constructor for class slib.sml.sm.core.metrics.ic.topo.ICi_depth_max_nonlinear
 
ICI_DEPTH_MAX_NONLINEAR - Static variable in class slib.sml.sm.core.utils.SMConstants
 
ICi_depth_min_nonlinear - Class in slib.sml.sm.core.metrics.ic.topo
Zhou Z, Wang Y, Gu J: A New Model of Information Content for Semantic Similarity in WordNet.
ICi_depth_min_nonlinear() - Constructor for class slib.sml.sm.core.metrics.ic.topo.ICi_depth_min_nonlinear
 
ICI_DEPTH_MIN_NONLINEAR - Static variable in class slib.sml.sm.core.utils.SMConstants
 
ICi_harispe_2012 - Class in slib.sml.sm.core.metrics.ic.topo
Modification of Sanchez et al.
ICi_harispe_2012() - Constructor for class slib.sml.sm.core.metrics.ic.topo.ICi_harispe_2012
 
ICI_HARISPE_2012 - Static variable in class slib.sml.sm.core.utils.SMConstants
 
ICI_PROB_OCCURENCE - Static variable in class slib.sml.sm.core.utils.SMConstants
 
ICI_PROB_OCCURENCE_PROPAGATED - Static variable in class slib.sml.sm.core.utils.SMConstants
 
ICi_probOccurence - Class in slib.sml.sm.core.metrics.ic.topo
ICi_resnik_1995 TODO Add resnik citation p(c) defined as number of top down fashion path leading to c from the reachable leaves from c + 1 max_pc = max p(c) for all concepts.
ICi_probOccurence() - Constructor for class slib.sml.sm.core.metrics.ic.topo.ICi_probOccurence
 
ICi_probOccurence_propagatted - Class in slib.sml.sm.core.metrics.ic.topo
ICi_resnik_1995 TODO Add resnik citation p(c) defined as number of top down fashion path leading to c from the reachable leaves from c + 1 max_pc = max p(c) for all concepts.
ICi_probOccurence_propagatted() - Constructor for class slib.sml.sm.core.metrics.ic.topo.ICi_probOccurence_propagatted
 
ICi_resnik_1995 - Class in slib.sml.sm.core.metrics.ic.topo
ICi_resnik_1995 TODO Add resnik citation p(c) defined as number of top down fashion path leading to c from the reachable leaves from c + 1 max_pc = max p(c) for all concepts.
ICi_resnik_1995() - Constructor for class slib.sml.sm.core.metrics.ic.topo.ICi_resnik_1995
 
ICI_RESNIK_1995 - Static variable in class slib.sml.sm.core.utils.SMConstants
 
ICI_RESNIK_UNPROPAGATED_1995 - Static variable in class slib.sml.sm.core.utils.SMConstants
 
ICi_resnik_unpropagatted_1995 - Class in slib.sml.sm.core.metrics.ic.topo
ICi_resnik_1995 TODO Add resnik citation p(c) defined as number of top down fashion path leading to c from the reachable leaves from c + 1 max_pc = max p(c) for all concepts.
ICi_resnik_unpropagatted_1995() - Constructor for class slib.sml.sm.core.metrics.ic.topo.ICi_resnik_unpropagatted_1995
 
ICi_sanchez_2011_a - Class in slib.sml.sm.core.metrics.ic.topo
Reference: Sanchez D, Batet M, Isern D: Ontology-based information content computation.
ICi_sanchez_2011_a() - Constructor for class slib.sml.sm.core.metrics.ic.topo.ICi_sanchez_2011_a
 
ICI_SANCHEZ_2011_a - Static variable in class slib.sml.sm.core.utils.SMConstants
 
ICi_sanchez_2011_b - Class in slib.sml.sm.core.metrics.ic.topo
Reference: Sanchez D, Batet M, Isern D: Ontology-based information content computation.
ICi_sanchez_2011_b() - Constructor for class slib.sml.sm.core.metrics.ic.topo.ICi_sanchez_2011_b
 
ICI_SANCHEZ_2011_b - Static variable in class slib.sml.sm.core.utils.SMConstants
 
ICi_seco_2004 - Class in slib.sml.sm.core.metrics.ic.topo
1.
ICi_seco_2004() - Constructor for class slib.sml.sm.core.metrics.ic.topo.ICi_seco_2004
 
ICI_SECO_2004 - Static variable in class slib.sml.sm.core.utils.SMConstants
 
ICi_zhou_2008 - Class in slib.sml.sm.core.metrics.ic.topo
Zhou Z, Wang Y, Gu J: A New Model of Information Content for Semantic Similarity in WordNet.
ICi_zhou_2008() - Constructor for class slib.sml.sm.core.metrics.ic.topo.ICi_zhou_2008
Builder of an instance of IC computer.
ICi_zhou_2008(double) - Constructor for class slib.sml.sm.core.metrics.ic.topo.ICi_zhou_2008
Builder of an instance of IC computer.
ICI_ZHOU_2008 - Static variable in class slib.sml.sm.core.utils.SMConstants
 
icsMapping - Static variable in class slib.sml.sm.core.utils.SMConstants
 
ICtopo - Interface in slib.sml.sm.core.metrics.ic.topo
Class representing Topological Information Content
IcUtils - Class in slib.sml.sm.core.metrics.ic.utils
Class used to defined static methods utility.
IcUtils() - Constructor for class slib.sml.sm.core.metrics.ic.utils.IcUtils
 
id - Variable in class slib.sml.sm.core.metrics.ic.utils.ICconf
ID used to represent the IC.
id - Variable in class slib.sml.sm.core.utils.OperatorConf
the unique id identifying the configuration.
id - Variable in class slib.sml.sm.core.utils.SMconf
The unique id associated to the configuration.
isCachePairwiseResults() - Method in class slib.sml.sm.core.engine.SM_Engine
Check if the engine is configured to store the results of the pairwise semantic measure computation.
isCorpusBased - Variable in class slib.sml.sm.core.metrics.ic.utils.ICconf
Define if the IC is corpus-based (extrinsic).
isCorpusBased() - Method in class slib.sml.sm.core.metrics.ic.utils.ICconf
 
isSymmetric() - Method in class slib.sml.sm.core.measures.graph.framework.dag.Sim_Framework_DAG_Set_Bader_2003
 
isSymmetric() - Method in class slib.sml.sm.core.measures.graph.framework.dag.Sim_Framework_DAG_Set_Batet_2010
 
isSymmetric() - Method in class slib.sml.sm.core.measures.graph.framework.dag.Sim_Framework_DAG_Set_Braun_Blanquet_1932
 
isSymmetric() - Method in class slib.sml.sm.core.measures.graph.framework.dag.Sim_Framework_DAG_Set_Dice_1945
 
isSymmetric() - Method in class slib.sml.sm.core.measures.graph.framework.dag.Sim_Framework_DAG_Set_Jaccard_1901
 
isSymmetric() - Method in class slib.sml.sm.core.measures.graph.framework.dag.Sim_Framework_DAG_Set_Knappe_2004
 
isSymmetric() - Method in class slib.sml.sm.core.measures.graph.framework.dag.Sim_Framework_DAG_Set_Korbel_2002
 
isSymmetric() - Method in class slib.sml.sm.core.measures.graph.framework.dag.Sim_Framework_DAG_Set_Maryland_Bridge_2003
 
isSymmetric() - Method in class slib.sml.sm.core.measures.graph.framework.dag.Sim_Framework_DAG_Set_Ochiai_1957
 
isSymmetric() - Method in class slib.sml.sm.core.measures.graph.framework.dag.Sim_Framework_DAG_Set_Simpson_1960
 
isSymmetric() - Method in class slib.sml.sm.core.measures.graph.framework.dag.Sim_Framework_DAG_Set_Sokal_Sneath_1963
 
isSymmetric() - Method in class slib.sml.sm.core.measures.graph.framework.dag.Sim_Framework_DAG_Set_Tversky_1977
 
isSymmetric() - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.experimental.Sim_pairwise_DAG_edge_G_SESAME_2007
 
isSymmetric() - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.experimental.Sim_pairwise_DAG_edge_Resnik_1995
 
isSymmetric() - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.experimental.Sim_pairwise_DAG_edge_Slimani_2006
 
isSymmetric() - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.Sim_pairwise_DAG_edge_Kyogoku_basic_2011
 
isSymmetric() - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.Sim_pairwise_DAG_edge_Leacock_Chodorow_1998
 
isSymmetric() - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.Sim_pairwise_DAG_edge_Pekar_Staab_2002
 
isSymmetric() - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.Sim_pairwise_DAG_edge_Rada_1989
 
isSymmetric() - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.Sim_pairwise_DAG_edge_Rada_LCA_1989
 
isSymmetric() - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.Sim_pairwise_DAG_edge_Stojanovic_2001
 
isSymmetric() - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.Sim_pairwise_DAG_edge_Wu_Palmer_1994
 
isSymmetric() - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.hybrid.experimental.Sim_pairwise_DAG_edge_Li_2003
 
isSymmetric() - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.hybrid.experimental.Sim_pairwise_DAG_hybrid_Ranwez_2006
 
isSymmetric() - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.hybrid.Sim_pairwise_DAG_hybrid_Wang_2007
 
isSymmetric() - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental.Sim_pairwise_DAG_node_GL_GraSM
 
isSymmetric() - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental.Sim_pairwise_DAG_node_Harispe_2013
 
isSymmetric() - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental.Sim_pairwise_DAG_node_Lin_1998_GraSM
 
isSymmetric() - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental.Sim_pairwise_DAG_node_Mazandu_2012
 
isSymmetric() - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental.Sim_pairwise_DAG_node_Resnik_1995_Ancestors
 
isSymmetric() - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental.Sim_pairwise_DAG_node_Resnik_1995_Descendants
 
isSymmetric() - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental.Sim_pairwise_DAG_node_Resnik_1995_GraSM
 
isSymmetric() - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental.Sim_pairwise_DAG_node_Schlicker_3WJaccard_SimRel
 
isSymmetric() - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental.Sim_pairwise_DAG_node_Schlicker_GL_SimRel
 
isSymmetric() - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental.Sim_pairwise_DAG_node_Schlicker_Jaccard_SimRel
 
isSymmetric() - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental.Sim_pairwise_DAG_node_Schlicker_Tversky_SimRel
 
isSymmetric() - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_GL
 
isSymmetric() - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_Jaccard_3W_IC
 
isSymmetric() - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_Jaccard_IC
 
isSymmetric() - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_Jiang_Conrath_1997
 
isSymmetric() - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_Jiang_Conrath_1997_Norm
 
isSymmetric() - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_Lin_1998
 
isSymmetric() - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_Resnik_1995
 
isSymmetric() - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_Schlicker_2006_SimRel
 
isSymmetric() - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_Sim_IC_2010
 
isSymmetric() - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_Tversky_IC
 
isSymmetric() - Method in class slib.sml.sm.core.measures.others.pairwise.Sim_pairwise_Random
 
isSymmetric() - Method in interface slib.sml.sm.core.measures.Sim_Pairwise
 

K

k_param_name - Static variable in class slib.sml.sm.core.measures.graph.framework.dag.Sim_Framework_DAG_Set_Tversky_1977
 

L

label - Variable in class slib.sml.sm.core.metrics.ic.utils.ICconf
label used to plot IC values.
label - Variable in class slib.sml.sm.core.utils.SMconf
The label of the configuration.
LCAFinder - Interface in slib.sml.sm.core.utils
 
LCAFinderImpl - Class in slib.sml.sm.core.utils
Dummy implementation of the LCAFinder interface (high algorithmic complexity).
LCAFinderImpl() - Constructor for class slib.sml.sm.core.utils.LCAFinderImpl
 
LevenshteinDistance - Class in slib.sml.sm.core.measures.string
Basic implementation of Levenshtein Distance http://en.wikipedia.org/wiki/Levenshtein_distance Levenshtein VI (1966).
LevenshteinDistance(boolean) - Constructor for class slib.sml.sm.core.measures.string.LevenshteinDistance
 
LevenshteinDistance(double, double, double, boolean) - Constructor for class slib.sml.sm.core.measures.string.LevenshteinDistance
 
LevenshteinSimilarity - Class in slib.sml.sm.core.measures.string
Based on Levenshtein distance i.e.
LevenshteinSimilarity(boolean) - Constructor for class slib.sml.sm.core.measures.string.LevenshteinSimilarity
 
LevenshteinSimilarity(double, double, double, boolean) - Constructor for class slib.sml.sm.core.measures.string.LevenshteinSimilarity
 
log(double, Double) - Static method in class slib.sml.sm.core.utils.MathSML
Compute the logarithm of the given value considering the specified log base.
LogBasedMetric - Class in slib.sml.sm.core.metrics.utils
 
LogBasedMetric() - Constructor for class slib.sml.sm.core.metrics.utils.LogBasedMetric
 
LogBasedMetricInterface - Interface in slib.sml.sm.core.metrics.utils
Interface implemented by classes depending on a log base configuration.

M

MathSML - Class in slib.sml.sm.core.utils
Class used to define some utility method for mathematical treatments.
MathSML() - Constructor for class slib.sml.sm.core.utils.MathSML
 
MEASURE_FLAGS_IC_DEPENDENCY - Static variable in class slib.sml.sm.core.utils.SMConstants
 
measure_param - Static variable in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental.Sim_pairwise_DAG_node_Harispe_2013
 
MEASURE_REQUIRE_EXTRA_IC - Static variable in class slib.sml.sm.core.utils.SMConstants
 
mergeTables(String, String, String, String, String) - Method in class slib.sml.smutils.SQLiteUtils
Merge two tables of a same database into a new table located in another database.
mergeTables(String, String, String, String, String, String) - Method in class slib.sml.smutils.SQLiteUtils
Merge two tables into a new table.

N

nbOccurrencePropagatted - Variable in class slib.sml.sm.core.engine.SMProxResultStorage
 
NO_CORRESPONDANCE - Static variable in class slib.sml.sm.core.utils.SMConstants
 

O

OperatorConf - Class in slib.sml.sm.core.utils
Configuration of an Operator
OperatorConf(String, String) - Constructor for class slib.sml.sm.core.utils.OperatorConf
Builder of an instance of configuration.
OperatorConf(String, String, ICconf) - Constructor for class slib.sml.sm.core.utils.OperatorConf
Builder of an instance of configuration.

P

PAIRWISE_DAG_EDGE_BASED - Static variable in class slib.sml.sm.core.utils.SMConstants
 
PAIRWISE_DAG_HYBRID_BASED - Static variable in class slib.sml.sm.core.utils.SMConstants
 
PAIRWISE_DAG_NODE_BASED - Static variable in class slib.sml.sm.core.utils.SMConstants
 
PAIRWISE_DAG_SET_BASED - Static variable in class slib.sml.sm.core.utils.SMConstants
 
PAIRWISE_GENERAL - Static variable in class slib.sml.sm.core.utils.SMConstants
 
PAIRWISE_MEASURE_FLAGS - Static variable in class slib.sml.sm.core.utils.SMConstants
 
pairwise_measure_id - Variable in class slib.sml.sm.core.utils.SMconf
The id of the pairwise measure associated to the configuration (in case of groupwise measures).
pairwiseClassName(String) - Static method in class slib.sml.sm.core.utils.SMConstants
Return the class Name of the given pairwise semantic measure flag
pairwiseMeasureMapping - Static variable in class slib.sml.sm.core.utils.SMConstants
 
ProbOccurence - Class in slib.sml.sm.core.metrics.ic.utils
 
ProbOccurence() - Constructor for class slib.sml.sm.core.metrics.ic.utils.ProbOccurence
 
process(String, String, String) - Method in class slib.sml.smutils.ResultsMerger
 
processLarge(String, String, String, String, Integer) - Method in class slib.sml.smutils.ResultsMerger
 

R

renameTable(String, String, String) - Method in class slib.sml.smutils.SQLiteUtils
Rename a table in a database.
requireDAG(int) - Static method in class slib.sml.sm.core.utils.SMConstants
Test if the approach requires the graph to be a Directed Acyclic Graph.
ResultsMerger - Class in slib.sml.smutils
Used to results merge files.
ResultsMerger() - Constructor for class slib.sml.smutils.ResultsMerger
 

S

searchMax_IC_MICA(URI, URI, Set<URI>, Set<URI>, Map<URI, Double>) - Static method in class slib.sml.sm.core.metrics.ic.utils.IcUtils
Search the IC of Most Informative Concept Shared between two sets, regarding the given metric.
searchMICA(URI, URI, Set<URI>, Set<URI>, Map<URI, Double>) - Static method in class slib.sml.sm.core.metrics.ic.utils.IcUtils
Search the Most Informative Concept Shared between two sets, regarding the given metric.
searchMin_pOc_MICA(Set<URI>, Set<URI>, Map<URI, Double>) - Static method in class slib.sml.sm.core.metrics.ic.utils.IcUtils
Search the IC of Less Informative Concept Shared between two sets, regarding the given metric.
searchMSA(Set<URI>, Map<URI, Integer>) - Static method in class slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.utils.SimDagEdgeUtils
Search the Most specific ancestor considering the depth
semanticMeasureClassName(String) - Static method in class slib.sml.sm.core.utils.SMConstants
Return the class Name of the given semantic measure flag
setBATCH_LIMIT(int) - Method in class slib.sml.smutils.SQLiteUtils
Setter of the number of value stored in memory.
setBATCH_LIMIT_MATRIX_LINE(int) - Method in class slib.sml.smutils.SQLiteUtils
Mutator of the number of values stored by line.
setCachePairwiseResults(boolean) - Method in class slib.sml.sm.core.engine.SM_Engine
Set the configuration of the engine regarding pairwise semantic measure score caching.
setICconf(ICconf) - Method in class slib.sml.sm.core.utils.SMconf
Mutator of the IC configuration.
setICSvalues(ICconf, Map<URI, Double>) - Method in class slib.sml.sm.core.engine.SM_Engine
Set the ICS stored for the given IC configuration to the specified set of values.
setK(double) - Method in class slib.sml.sm.core.measures.graph.framework.dag.Sim_Framework_DAG_Set_Knappe_2004
 
setK(double) - Method in class slib.sml.sm.core.measures.graph.framework.dag.Sim_Framework_DAG_Set_Tversky_1977
Setter of the k parameter value
setLogBase(Double) - Method in class slib.sml.sm.core.metrics.utils.LogBasedMetric
 
setLogBase(Conf) - Method in class slib.sml.sm.core.metrics.utils.LogBasedMetric
 
setLogBase(Double) - Method in interface slib.sml.sm.core.metrics.utils.LogBasedMetricInterface
Mutator of the log base associated to the metric.
setLogBase(Conf) - Method in interface slib.sml.sm.core.metrics.utils.LogBasedMetricInterface
Mutator of the log base associated to the metric.
setPairwise_measure_id(String) - Method in class slib.sml.sm.core.utils.SMconf
Mutator of the pairwise id.
setPreventIncoherency(boolean) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_Lin_1998
 
sim(URI, URI, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.graph.framework.dag.Sim_Framework_DAG_Set_abstract
 
sim(Set<URI>, Set<URI>, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.graph.framework.dag.Sim_Framework_DAG_Set_abstract
 
sim(Set<URI>, Set<URI>, SMconf) - Method in class slib.sml.sm.core.measures.graph.framework.dag.Sim_Framework_DAG_Set_abstract
This provide a way to compare the two sets of concepts which have been extended considering inference based on the taxonomic hierarchy.
sim(Set<URI>, Set<URI>, SMconf) - Method in class slib.sml.sm.core.measures.graph.framework.dag.Sim_Framework_DAG_Set_Bader_2003
 
sim(URI, URI, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.graph.framework.dag.Sim_Framework_DAG_Set_Batet_2010
 
sim(Set<URI>, Set<URI>, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.graph.framework.dag.Sim_Framework_DAG_Set_Batet_2010
 
sim(Set<URI>, Set<URI>, SMconf) - Method in class slib.sml.sm.core.measures.graph.framework.dag.Sim_Framework_DAG_Set_Batet_2010
 
sim(int, Set<URI>, Set<URI>) - Method in class slib.sml.sm.core.measures.graph.framework.dag.Sim_Framework_DAG_Set_Batet_2010
Normalized version
sim(Set<URI>, Set<URI>, SMconf) - Method in class slib.sml.sm.core.measures.graph.framework.dag.Sim_Framework_DAG_Set_Braun_Blanquet_1932
 
sim(Set<URI>, Set<URI>, SMconf) - Method in class slib.sml.sm.core.measures.graph.framework.dag.Sim_Framework_DAG_Set_Dice_1945
 
sim(Set<URI>, Set<URI>, SMconf) - Method in class slib.sml.sm.core.measures.graph.framework.dag.Sim_Framework_DAG_Set_Jaccard_1901
 
sim(Set<URI>, Set<URI>, SMconf) - Method in class slib.sml.sm.core.measures.graph.framework.dag.Sim_Framework_DAG_Set_Knappe_2004
 
sim(Set<URI>, Set<URI>, SMconf) - Method in class slib.sml.sm.core.measures.graph.framework.dag.Sim_Framework_DAG_Set_Korbel_2002
 
sim(Set<URI>, Set<URI>, SMconf) - Method in class slib.sml.sm.core.measures.graph.framework.dag.Sim_Framework_DAG_Set_Maryland_Bridge_2003
 
sim(Set<URI>, Set<URI>, SMconf) - Method in class slib.sml.sm.core.measures.graph.framework.dag.Sim_Framework_DAG_Set_Ochiai_1957
 
sim(Set<URI>, Set<URI>, SMconf) - Method in class slib.sml.sm.core.measures.graph.framework.dag.Sim_Framework_DAG_Set_Simpson_1960
 
sim(Set<URI>, Set<URI>, SMconf) - Method in class slib.sml.sm.core.measures.graph.framework.dag.Sim_Framework_DAG_Set_Sokal_Sneath_1963
 
sim(Set<URI>, Set<URI>, SMconf) - Method in class slib.sml.sm.core.measures.graph.framework.dag.Sim_Framework_DAG_Set_Tversky_1977
 
sim(Set<URI>, Set<URI>, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.graph.groupwise.dag.Sim_groupwise_DAG_Ali_Deane
 
sim(Set<URI>, Set<URI>, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.graph.groupwise.dag.Sim_groupwise_DAG_GIC
 
sim(Set<URI>, Set<URI>, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.graph.groupwise.dag.Sim_groupwise_DAG_Lee_2004
 
sim(Set<URI>, Set<URI>, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.graph.groupwise.dag.Sim_groupwise_DAG_LP
 
sim(Set<URI>, Set<URI>, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.graph.groupwise.dag.Sim_groupwise_DAG_NTO
 
sim(Set<URI>, Set<URI>, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.graph.groupwise.dag.Sim_groupwise_DAG_NTO_MAX
 
sim(Set<URI>, Set<URI>, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.graph.groupwise.dag.Sim_groupwise_DAG_TO
 
sim(Set<URI>, Set<URI>, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.graph.groupwise.dag.Sim_groupwise_DAG_UI
 
sim(URI, URI, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.experimental.Sim_pairwise_DAG_edge_Al_Mubaid_2006
 
sim(URI, URI, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.experimental.Sim_pairwise_DAG_edge_G_SESAME_2007
 
sim(URI, URI, Set<URI>, Set<URI>, Map<URI, Double>, Map<URI, Double>, Map<URI, Integer>) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.experimental.Sim_pairwise_DAG_edge_G_SESAME_2007
 
sim(URI, URI, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.experimental.Sim_pairwise_DAG_edge_Resnik_1995
 
sim(double, double) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.experimental.Sim_pairwise_DAG_edge_Resnik_1995
 
sim(URI, URI, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.experimental.Sim_pairwise_DAG_edge_Slimani_2006
 
sim(URI, URI, Set<URI>, Set<URI>, Map<URI, Integer>) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.experimental.Sim_pairwise_DAG_edge_Slimani_2006
 
sim(URI, URI, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.Sim_pairwise_DAG_edge_Kyogoku_basic_2011
 
sim(double, double, double) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.Sim_pairwise_DAG_edge_Kyogoku_basic_2011
Compute the semantic similarity considering the given parameters.
sim(URI, URI, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.Sim_pairwise_DAG_edge_Leacock_Chodorow_1998
 
sim(Double, double) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.Sim_pairwise_DAG_edge_Leacock_Chodorow_1998
Compute the semantic similarity considering the given parameters.
sim(URI, URI, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.Sim_pairwise_DAG_edge_Pekar_Staab_2002
 
sim(double, double, double) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.Sim_pairwise_DAG_edge_Pekar_Staab_2002
Compute the semantic similarity considering the given parameters.
sim(URI, URI, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.Sim_pairwise_DAG_edge_Rada_1989
 
sim(double) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.Sim_pairwise_DAG_edge_Rada_1989
Compute the Rada similarity given the distance of the shortest path linking the two concepts.
sim(URI, URI, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.Sim_pairwise_DAG_edge_Rada_LCA_1989
 
sim(Map<URI, Double>, Map<URI, Double>, Set<URI>, Set<URI>, Map<URI, Integer>) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.Sim_pairwise_DAG_edge_Rada_LCA_1989
Compute RADA based semantic similarity.
sim(URI, URI, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.Sim_pairwise_DAG_edge_Stojanovic_2001
 
sim(URI, URI, Collection<URI>, Collection<URI>, Map<URI, Integer>) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.Sim_pairwise_DAG_edge_Stojanovic_2001
Compute the semantic similarity considering the specified parameters.
sim(URI, URI, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.Sim_pairwise_DAG_edge_Wu_Palmer_1994
 
sim(URI, URI, Set<URI>, Set<URI>, Map<URI, Double>, Map<URI, Double>, Map<URI, Integer>) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.Sim_pairwise_DAG_edge_Wu_Palmer_1994
compute the semantic similarity considering the given parameters.
sim(URI, URI, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.hybrid.experimental.Sim_pairwise_DAG_edge_Li_2003
 
sim(double, Set<URI>, Set<URI>, Map<URI, Integer>) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.hybrid.experimental.Sim_pairwise_DAG_edge_Li_2003
Revenir sur la recherche du msa de Li Pour Li le msa est le concept de plus faible profondeur qui appartient au chemin le plus court entre les deux concepts passant par un ancetre commun des deux concepts Alpha in [0,1] (best : 0.2) Beta in ]0,1] (best : 0.6)
sim(URI, URI, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.hybrid.experimental.Sim_pairwise_DAG_hybrid_Ranwez_2006
 
sim(Set<URI>, Set<URI>, Set<URI>) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.hybrid.experimental.Sim_pairwise_DAG_hybrid_Ranwez_2006
 
sim(URI, URI, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.hybrid.Sim_pairwise_DAG_hybrid_Wang_2007
 
sim(URI, URI, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental.Sim_pairwise_DAG_node_GL_GraSM
 
sim(double, double, double, double) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental.Sim_pairwise_DAG_node_GL_GraSM
 
sim(URI, URI, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental.Sim_pairwise_DAG_node_Harispe_2013
 
sim(URI, URI, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental.Sim_pairwise_DAG_node_Lin_1998_GraSM
 
sim(double, double, double) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental.Sim_pairwise_DAG_node_Lin_1998_GraSM
 
sim(URI, URI, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental.Sim_pairwise_DAG_node_Mazandu_2012
 
sim(URI, URI, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental.Sim_pairwise_DAG_node_Resnik_1995_Ancestors
 
sim(URI, URI, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental.Sim_pairwise_DAG_node_Resnik_1995_Descendants
 
sim(URI, URI, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental.Sim_pairwise_DAG_node_Resnik_1995_GraSM
 
sim(double) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental.Sim_pairwise_DAG_node_Resnik_1995_GraSM
 
sim(URI, URI, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental.Sim_pairwise_DAG_node_Schlicker_3WJaccard_SimRel
 
sim(double, double, double, double) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental.Sim_pairwise_DAG_node_Schlicker_3WJaccard_SimRel
 
sim(URI, URI, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental.Sim_pairwise_DAG_node_Schlicker_GL_SimRel
 
sim(double, double, double, double, double) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental.Sim_pairwise_DAG_node_Schlicker_GL_SimRel
 
sim(URI, URI, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental.Sim_pairwise_DAG_node_Schlicker_Jaccard_SimRel
 
sim(double, double, double, double) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental.Sim_pairwise_DAG_node_Schlicker_Jaccard_SimRel
 
sim(URI, URI, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental.Sim_pairwise_DAG_node_Schlicker_Tversky_SimRel
 
sim(double, double, double, double, double, double) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental.Sim_pairwise_DAG_node_Schlicker_Tversky_SimRel
 
sim(URI, URI, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_GL
 
sim(double, double, double, double) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_GL
 
sim(URI, URI, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_Jaccard_3W_IC
 
sim(double, double, double) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_Jaccard_3W_IC
Compute the semantic similarity considering the given parameters.
sim(URI, URI, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_Jaccard_IC
 
sim(double, double, double) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_Jaccard_IC
Compute the semantic similarity considering the given parameters.
sim(URI, URI, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_Jiang_Conrath_1997
 
sim(double, double, double) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_Jiang_Conrath_1997
Compute the semantic similarity considering the given parameters.
sim(URI, URI, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_Jiang_Conrath_1997_Norm
 
sim(double, double, double) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_Jiang_Conrath_1997_Norm
Compute the semantic similarity considering the given parameters.
sim(URI, URI, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_Lin_1998
 
sim(double, double, double) - Static method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_Lin_1998
Compute the similarity considering the given Information Content.
sim(URI, URI, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_Resnik_1995
 
sim(URI, URI, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_Schlicker_2006_SimRel
 
sim(double, double, double, double) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_Schlicker_2006_SimRel
Compute the semantic similarity considering the given parameters
sim(URI, URI, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_Sim_IC_2010
 
sim(double, double, double) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_Sim_IC_2010
 
sim(URI, URI, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_Tversky_IC
 
sim(double, double, double) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_Tversky_IC
 
sim(Set<URI>, Set<URI>, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.others.groupwise.direct.Sim_groupwise_Random
 
sim(Set<URI>, Set<URI>, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.others.groupwise.direct.vector.VectorSpaceModel
 
sim(double, double, double) - Method in class slib.sml.sm.core.measures.others.groupwise.indirect.experimental.Sim_groupwise_AVERAGE_NORMALIZED_GOSIM
 
sim(Set<URI>, Set<URI>, SM_Engine, SMconf, SMconf) - Method in class slib.sml.sm.core.measures.others.groupwise.indirect.experimental.Sim_groupwise_AVERAGE_NORMALIZED_GOSIM
 
sim(double, double, double) - Method in class slib.sml.sm.core.measures.others.groupwise.indirect.experimental.Sim_groupwise_MAX_NORMALIZED_GOSIM
 
sim(Set<URI>, Set<URI>, SM_Engine, SMconf, SMconf) - Method in class slib.sml.sm.core.measures.others.groupwise.indirect.experimental.Sim_groupwise_MAX_NORMALIZED_GOSIM
 
sim() - Method in class slib.sml.sm.core.measures.others.groupwise.indirect.experimental.Sim_groupwise_Optimal_Assignment
 
sim(MatrixDouble<URI, URI>) - Static method in class slib.sml.sm.core.measures.others.groupwise.indirect.Sim_groupwise_Average
Compute the average of the values stored in the given matrix.
sim(Set<URI>, Set<URI>, SM_Engine, SMconf, SMconf) - Method in class slib.sml.sm.core.measures.others.groupwise.indirect.Sim_groupwise_Average
 
sim(Set<URI>, Set<URI>, SM_Engine, SMconf, SMconf) - Method in class slib.sml.sm.core.measures.others.groupwise.indirect.Sim_groupwise_BestMatchAverage
 
sim(MatrixDouble<URI, URI>) - Static method in class slib.sml.sm.core.measures.others.groupwise.indirect.Sim_groupwise_BestMatchAverage
 
sim(Set<URI>, Set<URI>, SM_Engine, SMconf, SMconf) - Method in class slib.sml.sm.core.measures.others.groupwise.indirect.Sim_groupwise_BestMatchMax
 
sim(MatrixDouble<URI, URI>) - Static method in class slib.sml.sm.core.measures.others.groupwise.indirect.Sim_groupwise_BestMatchMax
 
sim(Set<URI>, Set<URI>, SM_Engine, SMconf, SMconf) - Method in class slib.sml.sm.core.measures.others.groupwise.indirect.Sim_groupwise_Lord_2003
 
sim(MatrixDouble<URI, URI>) - Static method in class slib.sml.sm.core.measures.others.groupwise.indirect.Sim_groupwise_Lord_2003
 
sim(MatrixDouble<URI, URI>) - Static method in class slib.sml.sm.core.measures.others.groupwise.indirect.Sim_groupwise_Max
 
sim(Set<URI>, Set<URI>, SM_Engine, SMconf, SMconf) - Method in class slib.sml.sm.core.measures.others.groupwise.indirect.Sim_groupwise_Max
 
sim(MatrixDouble<URI, URI>) - Static method in class slib.sml.sm.core.measures.others.groupwise.indirect.Sim_groupwise_Min
 
sim(Set<URI>, Set<URI>, SM_Engine, SMconf, SMconf) - Method in class slib.sml.sm.core.measures.others.groupwise.indirect.Sim_groupwise_Min
 
sim(URI, URI, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.others.pairwise.Sim_pairwise_Random
 
sim(Set<URI>, Set<URI>, SM_Engine, SMconf) - Method in interface slib.sml.sm.core.measures.Sim_Groupwise_Direct
Compute the similarity between the given sets of concepts considering a particular configuration.
sim(Set<URI>, Set<URI>, SM_Engine, SMconf, SMconf) - Method in interface slib.sml.sm.core.measures.Sim_Groupwise_Indirect
Compute the similarity between the given sets of concepts considering a particular configuration.
sim(URI, URI, SM_Engine, SMconf) - Method in interface slib.sml.sm.core.measures.Sim_Pairwise
Compute the semantic similarity of the pair of concepts/classes.
sim(String, String) - Method in class slib.sml.sm.core.measures.string.LevenshteinSimilarity
 
Sim_DAG_edge_abstract - Class in slib.sml.sm.core.measures.graph.pairwise.dag.edge_based
Class used to represent a Sim_Pairwise_DAG which relies on a edge-based approach.
Sim_DAG_edge_abstract() - Constructor for class slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.Sim_DAG_edge_abstract
 
Sim_DAG_hybrid_abstract - Class in slib.sml.sm.core.measures.graph.pairwise.dag.hybrid
Class used to represent a semantic similarity measure which is based on a hybrid approach.
Sim_DAG_hybrid_abstract() - Constructor for class slib.sml.sm.core.measures.graph.pairwise.dag.hybrid.Sim_DAG_hybrid_abstract
 
Sim_DAG_node_abstract - Interface in slib.sml.sm.core.measures.graph.pairwise.dag.node_based
 
Sim_Framework_DAG_Set_abstract - Class in slib.sml.sm.core.measures.graph.framework.dag
Abstract class used to facilitate implementation of set based measures.
Sim_Framework_DAG_Set_abstract() - Constructor for class slib.sml.sm.core.measures.graph.framework.dag.Sim_Framework_DAG_Set_abstract
 
Sim_Framework_DAG_Set_Bader_2003 - Class in slib.sml.sm.core.measures.graph.framework.dag
Bader G, Hogue C: An automated method for finding molecular complexes in large protein interaction networks.
Sim_Framework_DAG_Set_Bader_2003() - Constructor for class slib.sml.sm.core.measures.graph.framework.dag.Sim_Framework_DAG_Set_Bader_2003
 
SIM_FRAMEWORK_DAG_SET_BADER_2003 - Static variable in class slib.sml.sm.core.utils.SMConstants
 
SIM_FRAMEWORK_DAG_SET_BASED - Static variable in class slib.sml.sm.core.utils.SMConstants
 
Sim_Framework_DAG_Set_Batet_2010 - Class in slib.sml.sm.core.measures.graph.framework.dag
Batet M, Sanchez D, Valls A: An ontology-based measure to compute semantic similarity in biomedicine.
Sim_Framework_DAG_Set_Batet_2010() - Constructor for class slib.sml.sm.core.measures.graph.framework.dag.Sim_Framework_DAG_Set_Batet_2010
 
SIM_FRAMEWORK_DAG_SET_BATET_2010 - Static variable in class slib.sml.sm.core.utils.SMConstants
 
Sim_Framework_DAG_Set_Braun_Blanquet_1932 - Class in slib.sml.sm.core.measures.graph.framework.dag
Braun-Blanquet J: Plant sociology: the study of plant communities.
Sim_Framework_DAG_Set_Braun_Blanquet_1932() - Constructor for class slib.sml.sm.core.measures.graph.framework.dag.Sim_Framework_DAG_Set_Braun_Blanquet_1932
 
SIM_FRAMEWORK_DAG_SET_BRAUN_BLANQUET_1932 - Static variable in class slib.sml.sm.core.utils.SMConstants
 
Sim_Framework_DAG_Set_Dice_1945 - Class in slib.sml.sm.core.measures.graph.framework.dag
Dice LR: Measures of the Amount of Ecologic Association Between Species.
Sim_Framework_DAG_Set_Dice_1945() - Constructor for class slib.sml.sm.core.measures.graph.framework.dag.Sim_Framework_DAG_Set_Dice_1945
 
SIM_FRAMEWORK_DAG_SET_DICE_1945 - Static variable in class slib.sml.sm.core.utils.SMConstants
 
Sim_Framework_DAG_Set_Jaccard_1901 - Class in slib.sml.sm.core.measures.graph.framework.dag
Jaccard P: Distribution de la flore alpine dans le bassin des Dranses et dans quelques regions voisines.
Sim_Framework_DAG_Set_Jaccard_1901() - Constructor for class slib.sml.sm.core.measures.graph.framework.dag.Sim_Framework_DAG_Set_Jaccard_1901
 
SIM_FRAMEWORK_DAG_SET_JACCARD_1901 - Static variable in class slib.sml.sm.core.utils.SMConstants
 
Sim_Framework_DAG_Set_Knappe_2004 - Class in slib.sml.sm.core.measures.graph.framework.dag
Knappe R, Bulskov H, Andreasen T: Perspectives on ontology-based querying.
Sim_Framework_DAG_Set_Knappe_2004() - Constructor for class slib.sml.sm.core.measures.graph.framework.dag.Sim_Framework_DAG_Set_Knappe_2004
 
Sim_Framework_DAG_Set_Knappe_2004(double) - Constructor for class slib.sml.sm.core.measures.graph.framework.dag.Sim_Framework_DAG_Set_Knappe_2004
 
SIM_FRAMEWORK_DAG_SET_KNAPPE_2004 - Static variable in class slib.sml.sm.core.utils.SMConstants
 
Sim_Framework_DAG_Set_Korbel_2002 - Class in slib.sml.sm.core.measures.graph.framework.dag
Korbel JO, Snel B, Huynen M a, Bork P: SHOT: a web server for the construction of genome phylogenies.
Sim_Framework_DAG_Set_Korbel_2002() - Constructor for class slib.sml.sm.core.measures.graph.framework.dag.Sim_Framework_DAG_Set_Korbel_2002
 
SIM_FRAMEWORK_DAG_SET_KORBEL_2002 - Static variable in class slib.sml.sm.core.utils.SMConstants
 
Sim_Framework_DAG_Set_Maryland_Bridge_2003 - Class in slib.sml.sm.core.measures.graph.framework.dag
Mirkin B, Koonin E: A top-down method for building genome classification trees with linear binary hierarchies.
Sim_Framework_DAG_Set_Maryland_Bridge_2003() - Constructor for class slib.sml.sm.core.measures.graph.framework.dag.Sim_Framework_DAG_Set_Maryland_Bridge_2003
 
SIM_FRAMEWORK_DAG_SET_MARYLAND_BRIDGE_2003 - Static variable in class slib.sml.sm.core.utils.SMConstants
 
Sim_Framework_DAG_Set_Ochiai_1957 - Class in slib.sml.sm.core.measures.graph.framework.dag
Ochiai A: Zoogeographic studies on the soleoid fishes found in Japan and its neighbouring regions.
Sim_Framework_DAG_Set_Ochiai_1957() - Constructor for class slib.sml.sm.core.measures.graph.framework.dag.Sim_Framework_DAG_Set_Ochiai_1957
 
SIM_FRAMEWORK_DAG_SET_OCHIAI_1957 - Static variable in class slib.sml.sm.core.utils.SMConstants
 
Sim_Framework_DAG_Set_Simpson_1960 - Class in slib.sml.sm.core.measures.graph.framework.dag
Simpson GG: Notes on the measurement of faunal resemblance.
Sim_Framework_DAG_Set_Simpson_1960() - Constructor for class slib.sml.sm.core.measures.graph.framework.dag.Sim_Framework_DAG_Set_Simpson_1960
 
SIM_FRAMEWORK_DAG_SET_SIMPSON_1960 - Static variable in class slib.sml.sm.core.utils.SMConstants
 
Sim_Framework_DAG_Set_Sokal_Sneath_1963 - Class in slib.sml.sm.core.measures.graph.framework.dag
Sokal RR, Sneath PHA: Principles of numerical taxonomy.
Sim_Framework_DAG_Set_Sokal_Sneath_1963() - Constructor for class slib.sml.sm.core.measures.graph.framework.dag.Sim_Framework_DAG_Set_Sokal_Sneath_1963
 
SIM_FRAMEWORK_DAG_SET_SOKAL_SNEATH_1963 - Static variable in class slib.sml.sm.core.utils.SMConstants
 
Sim_Framework_DAG_Set_Tversky_1977 - Class in slib.sml.sm.core.measures.graph.framework.dag
Tversky A: Features of similarity.
Sim_Framework_DAG_Set_Tversky_1977() - Constructor for class slib.sml.sm.core.measures.graph.framework.dag.Sim_Framework_DAG_Set_Tversky_1977
Create a Tversky Contrast Model semantic similarity instance with k parameter equals to 0.5
Sim_Framework_DAG_Set_Tversky_1977(double) - Constructor for class slib.sml.sm.core.measures.graph.framework.dag.Sim_Framework_DAG_Set_Tversky_1977
Create a Tversky Contrast Model semantic similarity instance.
SIM_FRAMEWORK_DAG_SET_TVERSKY_1977 - Static variable in class slib.sml.sm.core.utils.SMConstants
 
Sim_Groupwise - Interface in slib.sml.sm.core.measures
Interface used to represent Semantic similarity used to process pairs of groups of vertices.
SIM_GROUPWISE_ADD_ON - Static variable in class slib.sml.sm.core.utils.SMConstants
 
Sim_groupwise_Average - Class in slib.sml.sm.core.measures.others.groupwise.indirect
Classic Average Measure Assumes score symmetry
Sim_groupwise_Average() - Constructor for class slib.sml.sm.core.measures.others.groupwise.indirect.Sim_groupwise_Average
 
SIM_GROUPWISE_AVERAGE - Static variable in class slib.sml.sm.core.utils.SMConstants
 
Sim_groupwise_AVERAGE_NORMALIZED_GOSIM - Class in slib.sml.sm.core.measures.others.groupwise.indirect.experimental
 Frohlich H, Speer N, Poustka A, Beissbarth T: GOSim--an R-package for computation of information theoretic GO similarities between terms and gene products.
Sim_groupwise_AVERAGE_NORMALIZED_GOSIM() - Constructor for class slib.sml.sm.core.measures.others.groupwise.indirect.experimental.Sim_groupwise_AVERAGE_NORMALIZED_GOSIM
 
SIM_GROUPWISE_AVERAGE_NORMALIZED_GOSIM - Static variable in class slib.sml.sm.core.utils.SMConstants
 
SIM_GROUPWISE_BEST_MATCH_AVERAGE - Static variable in class slib.sml.sm.core.utils.SMConstants
 
SIM_GROUPWISE_BEST_MATCH_MAX - Static variable in class slib.sml.sm.core.utils.SMConstants
 
Sim_groupwise_BestMatchAverage - Class in slib.sml.sm.core.measures.others.groupwise.indirect
Schlicker A, Domingues FS, Rahnenführer J, Lengauer T: A new measure for functional similarity of gene products based on Gene Ontology.
Sim_groupwise_BestMatchAverage() - Constructor for class slib.sml.sm.core.measures.others.groupwise.indirect.Sim_groupwise_BestMatchAverage
 
Sim_groupwise_BestMatchMax - Class in slib.sml.sm.core.measures.others.groupwise.indirect
Schlicker A, Domingues FS, Rahnenführer J, Lengauer T: A new measure for functional similarity of gene products based on Gene Ontology.
Sim_groupwise_BestMatchMax() - Constructor for class slib.sml.sm.core.measures.others.groupwise.indirect.Sim_groupwise_BestMatchMax
 
SIM_GROUPWISE_DAG - Static variable in class slib.sml.sm.core.utils.SMConstants
 
Sim_groupwise_DAG_abstract - Class in slib.sml.sm.core.measures.graph.groupwise.dag
Abstract class used to represent a semantic measure which can be applied between two sets of concepts expressed in a Directed Acyclic Graph (DAG).
Sim_groupwise_DAG_abstract() - Constructor for class slib.sml.sm.core.measures.graph.groupwise.dag.Sim_groupwise_DAG_abstract
 
Sim_groupwise_DAG_Ali_Deane - Class in slib.sml.sm.core.measures.graph.groupwise.dag
Ali W, Deane CM.
Sim_groupwise_DAG_Ali_Deane() - Constructor for class slib.sml.sm.core.measures.graph.groupwise.dag.Sim_groupwise_DAG_Ali_Deane
 
SIM_GROUPWISE_DAG_ALI_DEANE - Static variable in class slib.sml.sm.core.utils.SMConstants
 
Sim_groupwise_DAG_GIC - Class in slib.sml.sm.core.measures.graph.groupwise.dag
Pesquita C, Faria D, Bastos H: Evaluating gobased semantic similarity measures.
Sim_groupwise_DAG_GIC() - Constructor for class slib.sml.sm.core.measures.graph.groupwise.dag.Sim_groupwise_DAG_GIC
 
SIM_GROUPWISE_DAG_GIC - Static variable in class slib.sml.sm.core.utils.SMConstants
 
Sim_groupwise_DAG_Lee_2004 - Class in slib.sml.sm.core.measures.graph.groupwise.dag
Lee HK, Hsu AK, Sajdak J, Qin J, Pavlidis P: Coexpression analysis of human genes across many microarray data sets.
Sim_groupwise_DAG_Lee_2004() - Constructor for class slib.sml.sm.core.measures.graph.groupwise.dag.Sim_groupwise_DAG_Lee_2004
 
SIM_GROUPWISE_DAG_LEE_2004 - Static variable in class slib.sml.sm.core.utils.SMConstants
 
Sim_groupwise_DAG_LP - Class in slib.sml.sm.core.measures.graph.groupwise.dag
Gentleman R: Visualizing and distances using GO.
Sim_groupwise_DAG_LP() - Constructor for class slib.sml.sm.core.measures.graph.groupwise.dag.Sim_groupwise_DAG_LP
 
SIM_GROUPWISE_DAG_LP - Static variable in class slib.sml.sm.core.utils.SMConstants
 
Sim_groupwise_DAG_NTO - Class in slib.sml.sm.core.measures.graph.groupwise.dag
Mistry M, Pavlidis P: Gene Ontology term overlap as a measure of gene functional similarity.
Sim_groupwise_DAG_NTO() - Constructor for class slib.sml.sm.core.measures.graph.groupwise.dag.Sim_groupwise_DAG_NTO
 
SIM_GROUPWISE_DAG_NTO - Static variable in class slib.sml.sm.core.utils.SMConstants
 
Sim_groupwise_DAG_NTO_MAX - Class in slib.sml.sm.core.measures.graph.groupwise.dag
Adaptation of Mistry M, Pavlidis P: Gene Ontology term overlap as a measure of gene functional similarity.
Sim_groupwise_DAG_NTO_MAX() - Constructor for class slib.sml.sm.core.measures.graph.groupwise.dag.Sim_groupwise_DAG_NTO_MAX
 
SIM_GROUPWISE_DAG_NTO_MAX - Static variable in class slib.sml.sm.core.utils.SMConstants
 
Sim_groupwise_DAG_TO - Class in slib.sml.sm.core.measures.graph.groupwise.dag
Mistry M, Pavlidis P: Gene Ontology term overlap as a measure of gene functional similarity.
Sim_groupwise_DAG_TO() - Constructor for class slib.sml.sm.core.measures.graph.groupwise.dag.Sim_groupwise_DAG_TO
 
SIM_GROUPWISE_DAG_TO - Static variable in class slib.sml.sm.core.utils.SMConstants
 
Sim_groupwise_DAG_UI - Class in slib.sml.sm.core.measures.graph.groupwise.dag
Gentleman R: Visualizing and distances using GO.
Sim_groupwise_DAG_UI() - Constructor for class slib.sml.sm.core.measures.graph.groupwise.dag.Sim_groupwise_DAG_UI
 
SIM_GROUPWISE_DAG_UI - Static variable in class slib.sml.sm.core.utils.SMConstants
 
Sim_Groupwise_Direct - Interface in slib.sml.sm.core.measures
Interface used to represent direct groupwise measures.
Sim_groupwise_general_abstract - Class in slib.sml.sm.core.measures.others.groupwise.indirect.experimental
 
Sim_groupwise_general_abstract() - Constructor for class slib.sml.sm.core.measures.others.groupwise.indirect.experimental.Sim_groupwise_general_abstract
 
Sim_Groupwise_Indirect - Interface in slib.sml.sm.core.measures
Interface used to represent groupwise measures based on a pairwise measures.
Sim_groupwise_Lord_2003 - Class in slib.sml.sm.core.measures.others.groupwise.indirect
Lord P: Investigating semantic similarity measures across the Gene Ontology: the relationship between sequence and annotation.
Sim_groupwise_Lord_2003() - Constructor for class slib.sml.sm.core.measures.others.groupwise.indirect.Sim_groupwise_Lord_2003
 
Sim_groupwise_Max - Class in slib.sml.sm.core.measures.others.groupwise.indirect
 
Sim_groupwise_Max() - Constructor for class slib.sml.sm.core.measures.others.groupwise.indirect.Sim_groupwise_Max
 
SIM_GROUPWISE_MAX - Static variable in class slib.sml.sm.core.utils.SMConstants
 
Sim_groupwise_MAX_NORMALIZED_GOSIM - Class in slib.sml.sm.core.measures.others.groupwise.indirect.experimental
 Frohlich H, Speer N, Poustka A, Beissbarth T: GOSim--an R-package for computation of information theoretic GO similarities between terms and gene products.
Sim_groupwise_MAX_NORMALIZED_GOSIM() - Constructor for class slib.sml.sm.core.measures.others.groupwise.indirect.experimental.Sim_groupwise_MAX_NORMALIZED_GOSIM
 
SIM_GROUPWISE_MAX_NORMALIZED_GOSIM - Static variable in class slib.sml.sm.core.utils.SMConstants
 
Sim_groupwise_Min - Class in slib.sml.sm.core.measures.others.groupwise.indirect
 
Sim_groupwise_Min() - Constructor for class slib.sml.sm.core.measures.others.groupwise.indirect.Sim_groupwise_Min
 
SIM_GROUPWISE_MIN - Static variable in class slib.sml.sm.core.utils.SMConstants
 
Sim_groupwise_Optimal_Assignment - Class in slib.sml.sm.core.measures.others.groupwise.indirect.experimental
TODO @see TODO file
Sim_groupwise_Optimal_Assignment() - Constructor for class slib.sml.sm.core.measures.others.groupwise.indirect.experimental.Sim_groupwise_Optimal_Assignment
 
SIM_GROUPWISE_OTHERS - Static variable in class slib.sml.sm.core.utils.SMConstants
 
Sim_groupwise_Random - Class in slib.sml.sm.core.measures.others.groupwise.direct
Random measure (used for test)
Sim_groupwise_Random() - Constructor for class slib.sml.sm.core.measures.others.groupwise.direct.Sim_groupwise_Random
 
SIM_GROUPWISE_RANDOM - Static variable in class slib.sml.sm.core.utils.SMConstants
 
SIM_GROUPWISE_SVM - Static variable in class slib.sml.sm.core.utils.SMConstants
 
Sim_Pairwise - Interface in slib.sml.sm.core.measures
Interface used to represent a pairwise measure which can be used to compute the semantic similarity of a pair of concepts/classes.
Sim_Pairwise_DAG - Interface in slib.sml.sm.core.measures.graph.pairwise.dag
Interface of a semantic similarity measure which can be used to compute the semantic similarity of two classes/concepts structured in a Directed Acyclic Graph (DAG).
Sim_pairwise_DAG_edge_Al_Mubaid_2006 - Class in slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.experimental
Al-Mubaid H, Nguyen HA: A cluster-based approach for semantic similarity in the biomedical domain.
Sim_pairwise_DAG_edge_Al_Mubaid_2006() - Constructor for class slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.experimental.Sim_pairwise_DAG_edge_Al_Mubaid_2006
 
SIM_PAIRWISE_DAG_EDGE_BASED - Static variable in class slib.sml.sm.core.utils.SMConstants
 
Sim_pairwise_DAG_edge_G_SESAME_2007 - Class in slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.experimental
TODO Check approximation using depth of concepts
Sim_pairwise_DAG_edge_G_SESAME_2007() - Constructor for class slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.experimental.Sim_pairwise_DAG_edge_G_SESAME_2007
 
Sim_pairwise_DAG_edge_Kyogoku_basic_2011 - Class in slib.sml.sm.core.measures.graph.pairwise.dag.edge_based
Kyogoku R, Fujimoto R, Ozaki T, Ohkawa T: A method for supporting retrieval of articles on protein structure analysis considering users ’ intention.
Sim_pairwise_DAG_edge_Kyogoku_basic_2011() - Constructor for class slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.Sim_pairwise_DAG_edge_Kyogoku_basic_2011
 
SIM_PAIRWISE_DAG_EDGE_KYOGOKU_BASIC_2011 - Static variable in class slib.sml.sm.core.utils.SMConstants
 
Sim_pairwise_DAG_edge_Leacock_Chodorow_1998 - Class in slib.sml.sm.core.measures.graph.pairwise.dag.edge_based
Implementation of Leacock and Chodorow semantic similarity measure.
Sim_pairwise_DAG_edge_Leacock_Chodorow_1998() - Constructor for class slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.Sim_pairwise_DAG_edge_Leacock_Chodorow_1998
 
SIM_PAIRWISE_DAG_EDGE_LEACOCK_CHODOROW_1998 - Static variable in class slib.sml.sm.core.utils.SMConstants
 
Sim_pairwise_DAG_edge_Li_2003 - Class in slib.sml.sm.core.measures.graph.pairwise.dag.hybrid.experimental
Li Y, Bandar ZA, McLean D: An approach for measuring semantic similarity between words using multiple information sources.
Sim_pairwise_DAG_edge_Li_2003() - Constructor for class slib.sml.sm.core.measures.graph.pairwise.dag.hybrid.experimental.Sim_pairwise_DAG_edge_Li_2003
 
SIM_PAIRWISE_DAG_EDGE_LI_2003 - Static variable in class slib.sml.sm.core.utils.SMConstants
 
Sim_pairwise_DAG_edge_Pekar_Staab_2002 - Class in slib.sml.sm.core.measures.graph.pairwise.dag.edge_based
Pekar V, Staab S: Taxonomy learning: factoring the structure of a taxonomy into a semantic classification decision.
Sim_pairwise_DAG_edge_Pekar_Staab_2002() - Constructor for class slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.Sim_pairwise_DAG_edge_Pekar_Staab_2002
 
SIM_PAIRWISE_DAG_EDGE_PEKAR_STAAB_2002 - Static variable in class slib.sml.sm.core.utils.SMConstants
 
Sim_pairwise_DAG_edge_Rada_1989 - Class in slib.sml.sm.core.measures.graph.pairwise.dag.edge_based
Rada R, Mili H, Bicknell E, Blettner M: Development and application of a metric on semantic nets.
Sim_pairwise_DAG_edge_Rada_1989() - Constructor for class slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.Sim_pairwise_DAG_edge_Rada_1989
 
SIM_PAIRWISE_DAG_EDGE_RADA_1989 - Static variable in class slib.sml.sm.core.utils.SMConstants
 
Sim_pairwise_DAG_edge_Rada_LCA_1989 - Class in slib.sml.sm.core.measures.graph.pairwise.dag.edge_based
Rada R, Mili H, Bicknell E, Blettner M: Development and application of a metric on semantic nets.
Sim_pairwise_DAG_edge_Rada_LCA_1989() - Constructor for class slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.Sim_pairwise_DAG_edge_Rada_LCA_1989
 
SIM_PAIRWISE_DAG_EDGE_RADA_LCA_1989 - Static variable in class slib.sml.sm.core.utils.SMConstants
 
Sim_pairwise_DAG_edge_Resnik_1995 - Class in slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.experimental
Faites au feeling par seb, verifier quelle est proche de celle de resnik
Sim_pairwise_DAG_edge_Resnik_1995() - Constructor for class slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.experimental.Sim_pairwise_DAG_edge_Resnik_1995
 
SIM_PAIRWISE_DAG_EDGE_RESNIK_1995 - Static variable in class slib.sml.sm.core.utils.SMConstants
 
Sim_pairwise_DAG_edge_Slimani_2006 - Class in slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.experimental
Slimani T, Boutheina BY, Mellouli K: A New Similarity Measure based on Edge Counting.
Sim_pairwise_DAG_edge_Slimani_2006() - Constructor for class slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.experimental.Sim_pairwise_DAG_edge_Slimani_2006
 
SIM_PAIRWISE_DAG_EDGE_SLIMANI_2006 - Static variable in class slib.sml.sm.core.utils.SMConstants
 
Sim_pairwise_DAG_edge_Stojanovic_2001 - Class in slib.sml.sm.core.measures.graph.pairwise.dag.edge_based
Stojanovic N, Alexander M, Staab S, Rudi S, York S: SEAL - A Framework for Developing SEmantic PortALs.
Sim_pairwise_DAG_edge_Stojanovic_2001() - Constructor for class slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.Sim_pairwise_DAG_edge_Stojanovic_2001
 
SIM_PAIRWISE_DAG_EDGE_STOJANOVIC_2001 - Static variable in class slib.sml.sm.core.utils.SMConstants
 
Sim_pairwise_DAG_edge_Wu_Palmer_1994 - Class in slib.sml.sm.core.measures.graph.pairwise.dag.edge_based
Wu Z, Palmer M: Verb semantics and lexical selection.
Sim_pairwise_DAG_edge_Wu_Palmer_1994() - Constructor for class slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.Sim_pairwise_DAG_edge_Wu_Palmer_1994
 
SIM_PAIRWISE_DAG_EDGE_WU_PALMER_1994 - Static variable in class slib.sml.sm.core.utils.SMConstants
 
SIM_PAIRWISE_DAG_HYBRID_BASED - Static variable in class slib.sml.sm.core.utils.SMConstants
 
Sim_pairwise_DAG_hybrid_Ranwez_2006 - Class in slib.sml.sm.core.measures.graph.pairwise.dag.hybrid.experimental
Ranwez S, Ranwez V, Villerd J, Crampes M: Ontological Distance Measures for Information Visualisation on Conceptual Maps.
Sim_pairwise_DAG_hybrid_Ranwez_2006() - Constructor for class slib.sml.sm.core.measures.graph.pairwise.dag.hybrid.experimental.Sim_pairwise_DAG_hybrid_Ranwez_2006
 
SIM_PAIRWISE_DAG_HYBRID_RANWEZ_2006 - Static variable in class slib.sml.sm.core.utils.SMConstants
 
Sim_pairwise_DAG_hybrid_Wang_2007 - Class in slib.sml.sm.core.measures.graph.pairwise.dag.hybrid
Wang JZ, Du Z, Payattakool R, Yu PS, Chen C-F: A new method to measure the semantic similarity of GO terms.
Sim_pairwise_DAG_hybrid_Wang_2007() - Constructor for class slib.sml.sm.core.measures.graph.pairwise.dag.hybrid.Sim_pairwise_DAG_hybrid_Wang_2007
 
SIM_PAIRWISE_DAG_NODE_BASED - Static variable in class slib.sml.sm.core.utils.SMConstants
 
Sim_pairwise_DAG_node_Constants - Class in slib.sml.sm.core.measures.graph.pairwise.dag.node_based
 
Sim_pairwise_DAG_node_Constants() - Constructor for class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_Constants
 
Sim_pairwise_DAG_node_GL - Class in slib.sml.sm.core.measures.graph.pairwise.dag.node_based
Gower and Legendre IC-based abstract expression.
Sim_pairwise_DAG_node_GL() - Constructor for class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_GL
 
SIM_PAIRWISE_DAG_NODE_GL - Static variable in class slib.sml.sm.core.utils.SMConstants
 
Sim_pairwise_DAG_node_GL_GraSM - Class in slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental
 
Sim_pairwise_DAG_node_GL_GraSM() - Constructor for class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental.Sim_pairwise_DAG_node_GL_GraSM
 
SIM_PAIRWISE_DAG_NODE_GL_GRASM - Static variable in class slib.sml.sm.core.utils.SMConstants
 
Sim_pairwise_DAG_node_Harispe_2013 - Class in slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental
 
Sim_pairwise_DAG_node_Harispe_2013() - Constructor for class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental.Sim_pairwise_DAG_node_Harispe_2013
 
SIM_PAIRWISE_DAG_NODE_HARISPE_2013 - Static variable in class slib.sml.sm.core.utils.SMConstants
 
SIM_PAIRWISE_DAG_NODE_IC_ANNOT - Static variable in class slib.sml.sm.core.utils.SMConstants
 
SIM_PAIRWISE_DAG_NODE_IC_INTRINSIC - Static variable in class slib.sml.sm.core.utils.SMConstants
 
Sim_pairwise_DAG_node_Jaccard_3W_IC - Class in slib.sml.sm.core.measures.graph.pairwise.dag.node_based
IC formulation of the Jaccard measure.
Sim_pairwise_DAG_node_Jaccard_3W_IC() - Constructor for class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_Jaccard_3W_IC
 
SIM_PAIRWISE_DAG_NODE_JACCARD_3W_IC - Static variable in class slib.sml.sm.core.utils.SMConstants
 
Sim_pairwise_DAG_node_Jaccard_IC - Class in slib.sml.sm.core.measures.graph.pairwise.dag.node_based
IC formulation of the Jaccard measure.
Sim_pairwise_DAG_node_Jaccard_IC() - Constructor for class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_Jaccard_IC
 
SIM_PAIRWISE_DAG_NODE_JACCARD_IC - Static variable in class slib.sml.sm.core.utils.SMConstants
 
Sim_pairwise_DAG_node_Jiang_Conrath_1997 - Class in slib.sml.sm.core.measures.graph.pairwise.dag.node_based
Jiang J, Conrath D: Semantic Similarity Based on Corpus Statistics and Lexical Taxonomy.
Sim_pairwise_DAG_node_Jiang_Conrath_1997() - Constructor for class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_Jiang_Conrath_1997
 
SIM_PAIRWISE_DAG_NODE_JIANG_CONRATH_1997 - Static variable in class slib.sml.sm.core.utils.SMConstants
 
Sim_pairwise_DAG_node_Jiang_Conrath_1997_Norm - Class in slib.sml.sm.core.measures.graph.pairwise.dag.node_based
Jiang J, Conrath D: Semantic Similarity Based on Corpus Statistics and Lexical Taxonomy.
Sim_pairwise_DAG_node_Jiang_Conrath_1997_Norm() - Constructor for class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_Jiang_Conrath_1997_Norm
 
SIM_PAIRWISE_DAG_NODE_JIANG_CONRATH_1997_NORM - Static variable in class slib.sml.sm.core.utils.SMConstants
 
Sim_pairwise_DAG_node_Lin_1998 - Class in slib.sml.sm.core.measures.graph.pairwise.dag.node_based
Lin D: An Information-Theoretic Definition of Similarity.
Sim_pairwise_DAG_node_Lin_1998() - Constructor for class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_Lin_1998
 
SIM_PAIRWISE_DAG_NODE_LIN_1998 - Static variable in class slib.sml.sm.core.utils.SMConstants
 
Sim_pairwise_DAG_node_Lin_1998_GraSM - Class in slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental
Lin D: An Information-Theoretic Definition of Similarity.
Sim_pairwise_DAG_node_Lin_1998_GraSM() - Constructor for class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental.Sim_pairwise_DAG_node_Lin_1998_GraSM
 
SIM_PAIRWISE_DAG_NODE_LIN_1998_GraSM - Static variable in class slib.sml.sm.core.utils.SMConstants
 
Sim_pairwise_DAG_node_Mazandu_2012 - Class in slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental
Implementation of the Universal similarity measure i.e.
Sim_pairwise_DAG_node_Mazandu_2012() - Constructor for class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental.Sim_pairwise_DAG_node_Mazandu_2012
 
SIM_PAIRWISE_DAG_NODE_MAZANDU_2012 - Static variable in class slib.sml.sm.core.utils.SMConstants
 
Sim_pairwise_DAG_node_Resnik_1995 - Class in slib.sml.sm.core.measures.graph.pairwise.dag.node_based
Resnik P: Using Information Content to Evaluate Semantic Similarity in a Taxonomy.
Sim_pairwise_DAG_node_Resnik_1995() - Constructor for class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_Resnik_1995
 
SIM_PAIRWISE_DAG_NODE_RESNIK_1995 - Static variable in class slib.sml.sm.core.utils.SMConstants
 
Sim_pairwise_DAG_node_Resnik_1995_Ancestors - Class in slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental
Resnik P: Using Information Content to Evaluate Semantic Similarity in a Taxonomy.
Sim_pairwise_DAG_node_Resnik_1995_Ancestors() - Constructor for class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental.Sim_pairwise_DAG_node_Resnik_1995_Ancestors
 
SIM_PAIRWISE_DAG_NODE_RESNIK_1995_ANCESTORS - Static variable in class slib.sml.sm.core.utils.SMConstants
 
Sim_pairwise_DAG_node_Resnik_1995_Descendants - Class in slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental
Resnik P: Using Information Content to Evaluate Semantic Similarity in a Taxonomy.
Sim_pairwise_DAG_node_Resnik_1995_Descendants() - Constructor for class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental.Sim_pairwise_DAG_node_Resnik_1995_Descendants
 
SIM_PAIRWISE_DAG_NODE_RESNIK_1995_DESCENDANTS - Static variable in class slib.sml.sm.core.utils.SMConstants
 
Sim_pairwise_DAG_node_Resnik_1995_GraSM - Class in slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental
Resnik P: Using Information Content to Evaluate Semantic Similarity in a Taxonomy.
Sim_pairwise_DAG_node_Resnik_1995_GraSM() - Constructor for class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental.Sim_pairwise_DAG_node_Resnik_1995_GraSM
 
SIM_PAIRWISE_DAG_NODE_RESNIK_1995_GraSM - Static variable in class slib.sml.sm.core.utils.SMConstants
 
SIM_PAIRWISE_DAG_NODE_SCHLICKER_2006 - Static variable in class slib.sml.sm.core.utils.SMConstants
 
Sim_pairwise_DAG_node_Schlicker_2006_SimRel - Class in slib.sml.sm.core.measures.graph.pairwise.dag.node_based
Schlicker, Andreas, et al.
Sim_pairwise_DAG_node_Schlicker_2006_SimRel() - Constructor for class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_Schlicker_2006_SimRel
 
SIM_PAIRWISE_DAG_NODE_SCHLICKER_3WJACCARD - Static variable in class slib.sml.sm.core.utils.SMConstants
 
Sim_pairwise_DAG_node_Schlicker_3WJaccard_SimRel - Class in slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental
 
Sim_pairwise_DAG_node_Schlicker_3WJaccard_SimRel() - Constructor for class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental.Sim_pairwise_DAG_node_Schlicker_3WJaccard_SimRel
 
SIM_PAIRWISE_DAG_NODE_SCHLICKER_GL - Static variable in class slib.sml.sm.core.utils.SMConstants
 
Sim_pairwise_DAG_node_Schlicker_GL_SimRel - Class in slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental
 
Sim_pairwise_DAG_node_Schlicker_GL_SimRel() - Constructor for class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental.Sim_pairwise_DAG_node_Schlicker_GL_SimRel
 
SIM_PAIRWISE_DAG_NODE_SCHLICKER_JACCARD - Static variable in class slib.sml.sm.core.utils.SMConstants
 
Sim_pairwise_DAG_node_Schlicker_Jaccard_SimRel - Class in slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental
 
Sim_pairwise_DAG_node_Schlicker_Jaccard_SimRel() - Constructor for class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental.Sim_pairwise_DAG_node_Schlicker_Jaccard_SimRel
 
SIM_PAIRWISE_DAG_NODE_SCHLICKER_TVERSKY - Static variable in class slib.sml.sm.core.utils.SMConstants
 
Sim_pairwise_DAG_node_Schlicker_Tversky_SimRel - Class in slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental
 
Sim_pairwise_DAG_node_Schlicker_Tversky_SimRel() - Constructor for class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental.Sim_pairwise_DAG_node_Schlicker_Tversky_SimRel
 
Sim_pairwise_DAG_node_Sim_IC_2010 - Class in slib.sml.sm.core.measures.graph.pairwise.dag.node_based
Effectively integrating information content and structural relationship to improve the GO-based similarity measure between proteins.
Sim_pairwise_DAG_node_Sim_IC_2010() - Constructor for class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_Sim_IC_2010
 
SIM_PAIRWISE_DAG_NODE_SIM_IC_2010 - Static variable in class slib.sml.sm.core.utils.SMConstants
 
Sim_pairwise_DAG_node_Tversky_IC - Class in slib.sml.sm.core.measures.graph.pairwise.dag.node_based
IC formulation of Tversky Ratio Model
Sim_pairwise_DAG_node_Tversky_IC() - Constructor for class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_Tversky_IC
 
Sim_pairwise_DAG_node_Tversky_IC(double, double) - Constructor for class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_Tversky_IC
Create a Tversky measure specifying alpha and beta parameters
SIM_PAIRWISE_DAG_NODE_TVERSKY_IC - Static variable in class slib.sml.sm.core.utils.SMConstants
 
SIM_PAIRWISE_GENERAL - Static variable in class slib.sml.sm.core.utils.SMConstants
 
Sim_pairwise_Random - Class in slib.sml.sm.core.measures.others.pairwise
Random measure for tests
Sim_pairwise_Random() - Constructor for class slib.sml.sm.core.measures.others.pairwise.Sim_pairwise_Random
 
SIM_PAIRWISE_RANDOM - Static variable in class slib.sml.sm.core.utils.SMConstants
 
SimDagEdgeUtils - Class in slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.utils
Utility class for edge-based measures.
SimDagEdgeUtils() - Constructor for class slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.utils.SimDagEdgeUtils
 
SimDagHybridUtils - Class in slib.sml.sm.core.measures.graph.pairwise.dag.hybrid.utils
 
SimDagHybridUtils() - Constructor for class slib.sml.sm.core.measures.graph.pairwise.dag.hybrid.utils.SimDagHybridUtils
 
slib.sml - package slib.sml
slib.sml is the package dedicated to the Semantic Measures Library (SML) More information about the SML and related projects can be found at http://www.lgi2p.ema.fr/kid/tools/sml/.
slib.sml.sm - package slib.sml.sm
slib.sml.sm is the package of the Semantic Measures Library (SML) which is dedicated to semantic measures computation.
slib.sml.sm.core.engine - package slib.sml.sm.core.engine
 
slib.sml.sm.core.measures - package slib.sml.sm.core.measures
 
slib.sml.sm.core.measures.graph.framework.dag - package slib.sml.sm.core.measures.graph.framework.dag
 
slib.sml.sm.core.measures.graph.groupwise.dag - package slib.sml.sm.core.measures.graph.groupwise.dag
 
slib.sml.sm.core.measures.graph.pairwise.dag - package slib.sml.sm.core.measures.graph.pairwise.dag
 
slib.sml.sm.core.measures.graph.pairwise.dag.edge_based - package slib.sml.sm.core.measures.graph.pairwise.dag.edge_based
 
slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.experimental - package slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.experimental
 
slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.utils - package slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.utils
 
slib.sml.sm.core.measures.graph.pairwise.dag.hybrid - package slib.sml.sm.core.measures.graph.pairwise.dag.hybrid
 
slib.sml.sm.core.measures.graph.pairwise.dag.hybrid.experimental - package slib.sml.sm.core.measures.graph.pairwise.dag.hybrid.experimental
 
slib.sml.sm.core.measures.graph.pairwise.dag.hybrid.utils - package slib.sml.sm.core.measures.graph.pairwise.dag.hybrid.utils
 
slib.sml.sm.core.measures.graph.pairwise.dag.node_based - package slib.sml.sm.core.measures.graph.pairwise.dag.node_based
 
slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental - package slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental
 
slib.sml.sm.core.measures.others.groupwise.direct - package slib.sml.sm.core.measures.others.groupwise.direct
 
slib.sml.sm.core.measures.others.groupwise.direct.vector - package slib.sml.sm.core.measures.others.groupwise.direct.vector
 
slib.sml.sm.core.measures.others.groupwise.indirect - package slib.sml.sm.core.measures.others.groupwise.indirect
 
slib.sml.sm.core.measures.others.groupwise.indirect.experimental - package slib.sml.sm.core.measures.others.groupwise.indirect.experimental
 
slib.sml.sm.core.measures.others.pairwise - package slib.sml.sm.core.measures.others.pairwise
 
slib.sml.sm.core.measures.string - package slib.sml.sm.core.measures.string
 
slib.sml.sm.core.metrics.ic - package slib.sml.sm.core.metrics.ic
 
slib.sml.sm.core.metrics.ic.annot - package slib.sml.sm.core.metrics.ic.annot
 
slib.sml.sm.core.metrics.ic.topo - package slib.sml.sm.core.metrics.ic.topo
 
slib.sml.sm.core.metrics.ic.utils - package slib.sml.sm.core.metrics.ic.utils
 
slib.sml.sm.core.metrics.utils - package slib.sml.sm.core.metrics.utils
 
slib.sml.sm.core.metrics.vector - package slib.sml.sm.core.metrics.vector
 
slib.sml.sm.core.utils - package slib.sml.sm.core.utils
 
slib.sml.smutils - package slib.sml.smutils
 
SM_Engine - Class in slib.sml.sm.core.engine
This class defines a Semantic Measures Engine giving access to numerous methods commonly used to define graph-based semantic measures.
SM_Engine(G) - Constructor for class slib.sml.sm.core.engine.SM_Engine
Constructor of an engine associated to the given graph.
SMconf - Class in slib.sml.sm.core.utils
Basic class used to represent the configuration associated to a Semantic Measures.
SMconf(String, String) - Constructor for class slib.sml.sm.core.utils.SMconf
Build an instance of configuration considering the given id and flag
SMconf(String, String, String) - Constructor for class slib.sml.sm.core.utils.SMconf
Build an instance of configuration considering the given id, flag and label.
SMconf(String, ICconf) - Constructor for class slib.sml.sm.core.utils.SMconf
Build an instance of configuration considering the given flag and Information Content configuration.
SMconf(String, String, ICconf) - Constructor for class slib.sml.sm.core.utils.SMconf
Build an instance of configuration considering the given flag and Information Content configuration.
SMconf(String, String, String, ICconf) - Constructor for class slib.sml.sm.core.utils.SMconf
Build an instance of configuration considering the given id, flag and Information Content configuration.
SMConstants - Class in slib.sml.sm.core.utils
Class used to defined Semantic Measures constants such as measures flags.
SMConstants() - Constructor for class slib.sml.sm.core.utils.SMConstants
 
SMParams - Enum in slib.sml.sm.core.utils
 
SMProxResultStorage - Class in slib.sml.sm.core.engine
 
SMProxResultStorage() - Constructor for class slib.sml.sm.core.engine.SMProxResultStorage
 
SMutils - Class in slib.sml.sm.core.utils
Class used to define utility methods.
SMutils() - Constructor for class slib.sml.sm.core.utils.SMutils
 
splitSize_default - Static variable in class slib.sml.smutils.ResultsMerger
 
SQLiteUtils - Class in slib.sml.smutils
Class used to process large SME results files through SQLlite databases Processed file must respect the following restrictions: - tab separated format - containing a header (first non-empty line which do not start with ! ).
SQLiteUtils() - Constructor for class slib.sml.smutils.SQLiteUtils
 

T

throwArithmeticCriticalException(SMconf, URI, URI, Object) - Static method in class slib.sml.sm.core.utils.SMutils
Used to generate a SLIB_Ex_Critic for a pairwise comparison considering the given parameters.
throwArithmeticCriticalException(SMconf, SMconf, URI, URI, Object) - Static method in class slib.sml.sm.core.utils.SMutils
Used to generate a SLIB_Ex_Critic for a groupwise comparison considering the given parameters.
toString() - Method in class slib.sml.sm.core.metrics.ic.utils.ICconf
 
toString() - Method in class slib.sml.sm.core.utils.OperatorConf
 
toString() - Method in class slib.sml.sm.core.utils.SMconf
 

V

valueOf(String) - Static method in enum slib.sml.sm.core.utils.SMParams
Returns the enum constant of this type with the specified name.
values() - Static method in enum slib.sml.sm.core.utils.SMParams
Returns an array containing the constants of this enum type, in the order they are declared.
VectorSpaceModel - Class in slib.sml.sm.core.measures.others.groupwise.direct.vector
 
VectorSpaceModel() - Constructor for class slib.sml.sm.core.measures.others.groupwise.direct.vector.VectorSpaceModel
 
VectorWeight_Chabalier_2007 - Class in slib.sml.sm.core.metrics.vector
 
VectorWeight_Chabalier_2007() - Constructor for class slib.sml.sm.core.metrics.vector.VectorWeight_Chabalier_2007
 
VectorWeight_Chabalier_Propaggated - Class in slib.sml.sm.core.metrics.vector
 
VectorWeight_Chabalier_Propaggated() - Constructor for class slib.sml.sm.core.metrics.vector.VectorWeight_Chabalier_Propaggated
 

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