slib.sml.sm.core.measures.graph.groupwise.dag
Class Sim_groupwise_DAG_Lee_2004

java.lang.Object
  extended by slib.sml.sm.core.measures.graph.groupwise.dag.Sim_groupwise_DAG_abstract
      extended by slib.sml.sm.core.measures.graph.groupwise.dag.Sim_groupwise_DAG_Lee_2004
All Implemented Interfaces:
Sim_Groupwise, Sim_Groupwise_Direct

public class Sim_groupwise_DAG_Lee_2004
extends Sim_groupwise_DAG_abstract

Lee HK, Hsu AK, Sajdak J, Qin J, Pavlidis P: Coexpression analysis of human genes across many microarray data sets. Genome Research 2004, 14:1085.

Author:
Sébastien Harispe

Constructor Summary
Sim_groupwise_DAG_Lee_2004()
           
 
Method Summary
 double sim(Set<org.openrdf.model.URI> setA, Set<org.openrdf.model.URI> setB, SM_Engine c, SMconf conf)
          Compute the similarity between the given sets of concepts considering a particular configuration.
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

Sim_groupwise_DAG_Lee_2004

public Sim_groupwise_DAG_Lee_2004()
Method Detail

sim

public double sim(Set<org.openrdf.model.URI> setA,
                  Set<org.openrdf.model.URI> setB,
                  SM_Engine c,
                  SMconf conf)
Description copied from interface: Sim_Groupwise_Direct
Compute the similarity between the given sets of concepts considering a particular configuration.

Parameters:
setA - the first set of vertices
setB - the second set of vertices
c - the engine used to access specific information used by the measures
conf - the groupwise configuration.
Returns:
the semantic similarity of the pair of groups of concepts


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