slib.sml.sm.core.measures.others.groupwise.indirect.experimental
Class Sim_groupwise_AVERAGE_NORMALIZED_GOSIM
java.lang.Object
slib.sml.sm.core.measures.others.groupwise.indirect.experimental.Sim_groupwise_general_abstract
slib.sml.sm.core.measures.others.groupwise.indirect.experimental.Sim_groupwise_AVERAGE_NORMALIZED_GOSIM
- All Implemented Interfaces:
- Sim_Groupwise, Sim_Groupwise_Indirect
public class Sim_groupwise_AVERAGE_NORMALIZED_GOSIM
- extends Sim_groupwise_general_abstract
Frohlich H, Speer N, Poustka A, Beissbarth T: GOSim--an R-package for
computation of information theoretic GO similarities between terms and gene
products. BMC bioinformatics 2007, 8:166. Implementation as defined in
equation 7 page 3/8
- Author:
- Sebastien Harispe
Method Summary |
double |
sim(double avgScore_sA_vs_sB,
double avgScore_sA_vs_sA,
double avgScore_sB_vs_sB)
|
double |
sim(Set<org.openrdf.model.URI> setA,
Set<org.openrdf.model.URI> setB,
SM_Engine rc,
SMconf groupwiseconf,
SMconf paiwiseconf)
Compute the similarity between the given sets of concepts considering a particular configuration. |
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Sim_groupwise_AVERAGE_NORMALIZED_GOSIM
public Sim_groupwise_AVERAGE_NORMALIZED_GOSIM()
sim
public double sim(double avgScore_sA_vs_sB,
double avgScore_sA_vs_sA,
double avgScore_sB_vs_sB)
sim
public double sim(Set<org.openrdf.model.URI> setA,
Set<org.openrdf.model.URI> setB,
SM_Engine rc,
SMconf groupwiseconf,
SMconf paiwiseconf)
throws slib.utils.ex.SLIB_Ex_Critic
- Description copied from interface:
Sim_Groupwise_Indirect
- Compute the similarity between the given sets of concepts considering a particular configuration.
Note that the specified pairwise configuration must override the pairwise configuration originally specified in the groupwise configuration (if any).
- Parameters:
setA
- the first set of verticessetB
- the second set of verticesrc
- the engine used to access specific information used by the measuresgroupwiseconf
- the groupwise configuration.paiwiseconf
- the pairwise configuration.
- Returns:
- the semantic similarity of the pair of groups of concepts
- Throws:
slib.utils.ex.SLIB_Ex_Critic
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