slib.sml.sm.core.measures.graph.groupwise.dag
Class Sim_groupwise_DAG_NTO_MAX
java.lang.Object
slib.sml.sm.core.measures.graph.groupwise.dag.Sim_groupwise_DAG_abstract
slib.sml.sm.core.measures.graph.groupwise.dag.Sim_groupwise_DAG_NTO_MAX
- All Implemented Interfaces:
- Sim_Groupwise, Sim_Groupwise_Direct
public class Sim_groupwise_DAG_NTO_MAX
- extends Sim_groupwise_DAG_abstract
Adaptation of Mistry M, Pavlidis P: Gene Ontology term overlap as a measure
of gene functional similarity. BMC bioinformatics 2008, 9:327.
The maximum of the cardinality of the denominator is used in this version.
- Author:
- Sébastien Harispe
Method Summary |
double |
sim(Set<org.openrdf.model.URI> setA,
Set<org.openrdf.model.URI> setB,
SM_Engine rc,
SMconf conf)
Compute the similarity between the given sets of concepts considering a
particular configuration. |
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Sim_groupwise_DAG_NTO_MAX
public Sim_groupwise_DAG_NTO_MAX()
sim
public double sim(Set<org.openrdf.model.URI> setA,
Set<org.openrdf.model.URI> setB,
SM_Engine rc,
SMconf conf)
- Description copied from interface:
Sim_Groupwise_Direct
- Compute the similarity between the given sets of concepts considering a
particular configuration.
- Parameters:
setA
- the first set of verticessetB
- the second set of verticesrc
- the engine used to access specific information used by the
measuresconf
- the groupwise configuration.
- Returns:
- the semantic similarity of the pair of groups of concepts
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