slib.sml.sm.core.measures.graph.groupwise.dag
Class Sim_groupwise_DAG_TO

java.lang.Object
  extended by slib.sml.sm.core.measures.graph.groupwise.dag.Sim_groupwise_DAG_abstract
      extended by slib.sml.sm.core.measures.graph.groupwise.dag.Sim_groupwise_DAG_TO
All Implemented Interfaces:
Sim_Groupwise, Sim_Groupwise_Direct

public class Sim_groupwise_DAG_TO
extends Sim_groupwise_DAG_abstract

Mistry M, Pavlidis P: Gene Ontology term overlap as a measure of gene functional similarity. BMC bioinformatics 2008, 9:327. Implementation of the Term Overlap measure (TO) which is the cardinality of the set of vertices composing the graph build from the intersection of the graphs induced by the ancestors of the two given sets of concepts.

Author:
Harispe Sébastien

Constructor Summary
Sim_groupwise_DAG_TO()
           
 
Method Summary
 double sim(Set<org.openrdf.model.URI> setA, Set<org.openrdf.model.URI> setB, SM_Engine c, SMconf conf)
          Compute the similarity between the given sets of concepts considering a particular configuration.
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

Sim_groupwise_DAG_TO

public Sim_groupwise_DAG_TO()
Method Detail

sim

public double sim(Set<org.openrdf.model.URI> setA,
                  Set<org.openrdf.model.URI> setB,
                  SM_Engine c,
                  SMconf conf)
Description copied from interface: Sim_Groupwise_Direct
Compute the similarity between the given sets of concepts considering a particular configuration.

Parameters:
setA - the first set of vertices
setB - the second set of vertices
c - the engine used to access specific information used by the measures
conf - the groupwise configuration.
Returns:
the semantic similarity of the pair of groups of concepts


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