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java.lang.Objectslib.sml.sm.core.measures.graph.framework.dag.Sim_Framework_DAG_Set_abstract
slib.sml.sm.core.measures.graph.framework.dag.Sim_Framework_DAG_Set_Batet_2010
public class Sim_Framework_DAG_Set_Batet_2010
Batet M, Sanchez D, Valls A: An ontology-based measure to compute semantic similarity in biomedicine. Journal of biomedical informatics 2010, 44:118-125. IC is normalize considering spirit formulated in given by Faria and al in order to produce results [0,1]. Faria D, Pesquita C, Couto FM, Falcão A: Proteinon: A web tool for protein semantic similarity. 2007.
Constructor Summary | |
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Sim_Framework_DAG_Set_Batet_2010()
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Method Summary | |
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boolean |
isSymmetric()
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double |
sim(int nbVertices,
Set<org.openrdf.model.URI> a,
Set<org.openrdf.model.URI> b)
Normalized version |
double |
sim(Set<org.openrdf.model.URI> setA,
Set<org.openrdf.model.URI> setB,
SM_Engine c,
SMconf conf)
Compute the similarity between the given sets of concepts considering a particular configuration. |
double |
sim(Set<org.openrdf.model.URI> ancA,
Set<org.openrdf.model.URI> ancB,
SMconf conf)
This provide a way to compare the two sets of concepts which have been extended considering inference based on the taxonomic hierarchy. |
double |
sim(org.openrdf.model.URI a,
org.openrdf.model.URI b,
SM_Engine c,
SMconf conf)
Compute the semantic similarity of the pair of concepts/classes. |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
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public Sim_Framework_DAG_Set_Batet_2010()
Method Detail |
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public double sim(org.openrdf.model.URI a, org.openrdf.model.URI b, SM_Engine c, SMconf conf)
Sim_Pairwise
sim
in interface Sim_Pairwise
sim
in class Sim_Framework_DAG_Set_abstract
a
- the first concept/classb
- the second concept/classc
- the engine used to access information required by the measuresconf
- the configuration to consider
public double sim(Set<org.openrdf.model.URI> setA, Set<org.openrdf.model.URI> setB, SM_Engine c, SMconf conf)
Sim_Groupwise_Direct
sim
in interface Sim_Groupwise_Direct
sim
in class Sim_Framework_DAG_Set_abstract
setA
- the first set of verticessetB
- the second set of verticesc
- the engine used to access specific information used by the
measuresconf
- the groupwise configuration.
public double sim(Set<org.openrdf.model.URI> ancA, Set<org.openrdf.model.URI> ancB, SMconf conf)
Sim_Framework_DAG_Set_abstract
sim
in class Sim_Framework_DAG_Set_abstract
ancA
- the first setancB
- the second setconf
- the configuration to apply to compute the semantic similarity
public double sim(int nbVertices, Set<org.openrdf.model.URI> a, Set<org.openrdf.model.URI> b)
nbVertices
- a
- b
-
public boolean isSymmetric()
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