slib.sml.sm.core.measures.graph.groupwise.dag
Class Sim_groupwise_DAG_Ali_Deane
java.lang.Object
slib.sml.sm.core.measures.graph.groupwise.dag.Sim_groupwise_DAG_abstract
slib.sml.sm.core.measures.graph.groupwise.dag.Sim_groupwise_DAG_Ali_Deane
- All Implemented Interfaces:
- Sim_Groupwise, Sim_Groupwise_Direct
public class Sim_groupwise_DAG_Ali_Deane
- extends Sim_groupwise_DAG_abstract
Ali W, Deane CM. Functionally guided alignment of pro- tein interaction
networks for module detection. Bioinformatics 2009;25:3166–73.
Measures also know through the name Funsim.
- Author:
- Sebastien Harispe
Method Summary |
double |
sim(Set<org.openrdf.model.URI> setA,
Set<org.openrdf.model.URI> setB,
SM_Engine rc,
SMconf conf)
Compute the similarity between the given sets of concepts considering a
particular configuration. |
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Sim_groupwise_DAG_Ali_Deane
public Sim_groupwise_DAG_Ali_Deane()
sim
public double sim(Set<org.openrdf.model.URI> setA,
Set<org.openrdf.model.URI> setB,
SM_Engine rc,
SMconf conf)
throws slib.utils.ex.SLIB_Exception
- Description copied from interface:
Sim_Groupwise_Direct
- Compute the similarity between the given sets of concepts considering a
particular configuration.
- Parameters:
setA
- the first set of verticessetB
- the second set of verticesrc
- the engine used to access specific information used by the
measuresconf
- the groupwise configuration.
- Returns:
- the semantic similarity of the pair of groups of concepts
- Throws:
slib.utils.ex.SLIB_Exception
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