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Uses of Sim_Groupwise in slib.sml.sm.core.measures |
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Subinterfaces of Sim_Groupwise in slib.sml.sm.core.measures | |
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interface |
Sim_Groupwise_Direct
Interface used to represent direct groupwise measures. |
interface |
Sim_Groupwise_Indirect
Interface used to represent groupwise measures based on a pairwise measures. |
Uses of Sim_Groupwise in slib.sml.sm.core.measures.graph.framework.dag |
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Classes in slib.sml.sm.core.measures.graph.framework.dag that implement Sim_Groupwise | |
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class |
Sim_Framework_DAG_Set_abstract
Abstract class used to facilitate implementation of set based measures. |
class |
Sim_Framework_DAG_Set_Bader_2003
Bader G, Hogue C: An automated method for finding molecular complexes in large protein interaction networks. |
class |
Sim_Framework_DAG_Set_Batet_2010
Batet M, Sanchez D, Valls A: An ontology-based measure to compute semantic similarity in biomedicine. |
class |
Sim_Framework_DAG_Set_Braun_Blanquet_1932
Braun-Blanquet J: Plant sociology: the study of plant communities. |
class |
Sim_Framework_DAG_Set_Dice_1945
Dice LR: Measures of the Amount of Ecologic Association Between Species. |
class |
Sim_Framework_DAG_Set_Jaccard_1901
Jaccard P: Distribution de la flore alpine dans le bassin des Dranses et dans quelques regions voisines. |
class |
Sim_Framework_DAG_Set_Knappe_2004
Knappe R, Bulskov H, Andreasen T: Perspectives on ontology-based querying. |
class |
Sim_Framework_DAG_Set_Korbel_2002
Korbel JO, Snel B, Huynen M a, Bork P: SHOT: a web server for the construction of genome phylogenies. |
class |
Sim_Framework_DAG_Set_Maryland_Bridge_2003
Mirkin B, Koonin E: A top-down method for building genome classification trees with linear binary hierarchies. |
class |
Sim_Framework_DAG_Set_Ochiai_1957
Ochiai A: Zoogeographic studies on the soleoid fishes found in Japan and its neighbouring regions. |
class |
Sim_Framework_DAG_Set_Simpson_1960
Simpson GG: Notes on the measurement of faunal resemblance. |
class |
Sim_Framework_DAG_Set_Sokal_Sneath_1963
Sokal RR, Sneath PHA: Principles of numerical taxonomy. |
class |
Sim_Framework_DAG_Set_Tversky_1977
Tversky A: Features of similarity. |
Uses of Sim_Groupwise in slib.sml.sm.core.measures.graph.groupwise.dag |
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Classes in slib.sml.sm.core.measures.graph.groupwise.dag that implement Sim_Groupwise | |
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class |
Sim_groupwise_DAG_abstract
Abstract class used to represent a semantic measure which can be applied between two sets of concepts expressed in a Directed Acyclic Graph (DAG). |
class |
Sim_groupwise_DAG_Ali_Deane
Ali W, Deane CM. |
class |
Sim_groupwise_DAG_GIC
Pesquita C, Faria D, Bastos H: Evaluating gobased semantic similarity measures. |
class |
Sim_groupwise_DAG_Lee_2004
Lee HK, Hsu AK, Sajdak J, Qin J, Pavlidis P: Coexpression analysis of human genes across many microarray data sets. |
class |
Sim_groupwise_DAG_LP
Gentleman R: Visualizing and distances using GO. |
class |
Sim_groupwise_DAG_NTO
Mistry M, Pavlidis P: Gene Ontology term overlap as a measure of gene functional similarity. |
class |
Sim_groupwise_DAG_NTO_MAX
Adaptation of Mistry M, Pavlidis P: Gene Ontology term overlap as a measure of gene functional similarity. |
class |
Sim_groupwise_DAG_TO
Mistry M, Pavlidis P: Gene Ontology term overlap as a measure of gene functional similarity. |
class |
Sim_groupwise_DAG_UI
Gentleman R: Visualizing and distances using GO. |
Uses of Sim_Groupwise in slib.sml.sm.core.measures.others.groupwise.direct |
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Classes in slib.sml.sm.core.measures.others.groupwise.direct that implement Sim_Groupwise | |
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class |
Sim_groupwise_Random
Random measure (used for test) |
Uses of Sim_Groupwise in slib.sml.sm.core.measures.others.groupwise.direct.vector |
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Classes in slib.sml.sm.core.measures.others.groupwise.direct.vector that implement Sim_Groupwise | |
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class |
VectorSpaceModel
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Uses of Sim_Groupwise in slib.sml.sm.core.measures.others.groupwise.indirect |
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Classes in slib.sml.sm.core.measures.others.groupwise.indirect that implement Sim_Groupwise | |
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class |
Sim_groupwise_Average
Classic Average Measure Assumes score symmetry |
class |
Sim_groupwise_BestMatchAverage
Schlicker A, Domingues FS, Rahnenführer J, Lengauer T: A new measure for functional similarity of gene products based on Gene Ontology. |
class |
Sim_groupwise_BestMatchMax
Schlicker A, Domingues FS, Rahnenführer J, Lengauer T: A new measure for functional similarity of gene products based on Gene Ontology. |
class |
Sim_groupwise_Lord_2003
Lord P: Investigating semantic similarity measures across the Gene Ontology: the relationship between sequence and annotation. |
class |
Sim_groupwise_Max
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class |
Sim_groupwise_Min
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Uses of Sim_Groupwise in slib.sml.sm.core.measures.others.groupwise.indirect.experimental |
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Classes in slib.sml.sm.core.measures.others.groupwise.indirect.experimental that implement Sim_Groupwise | |
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class |
Sim_groupwise_AVERAGE_NORMALIZED_GOSIM
Frohlich H, Speer N, Poustka A, Beissbarth T: GOSim--an R-package for computation of information theoretic GO similarities between terms and gene products. |
class |
Sim_groupwise_general_abstract
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class |
Sim_groupwise_MAX_NORMALIZED_GOSIM
Frohlich H, Speer N, Poustka A, Beissbarth T: GOSim--an R-package for computation of information theoretic GO similarities between terms and gene products. |
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