slib.sml.sm.core.measures.graph.groupwise.dag
Class Sim_groupwise_DAG_Ali_Deane

java.lang.Object
  extended by slib.sml.sm.core.measures.graph.groupwise.dag.Sim_groupwise_DAG_abstract
      extended by slib.sml.sm.core.measures.graph.groupwise.dag.Sim_groupwise_DAG_Ali_Deane
All Implemented Interfaces:
Sim_Groupwise, Sim_Groupwise_Direct

public class Sim_groupwise_DAG_Ali_Deane
extends Sim_groupwise_DAG_abstract

Ali W, Deane CM. Functionally guided alignment of pro- tein interaction networks for module detection. Bioinformatics 2009;25:3166–73. Measures also know through the name Funsim.

Author:
Sebastien Harispe

Constructor Summary
Sim_groupwise_DAG_Ali_Deane()
           
 
Method Summary
 double sim(Set<org.openrdf.model.URI> setA, Set<org.openrdf.model.URI> setB, SM_Engine rc, SMconf conf)
          Compute the similarity between the given sets of concepts considering a particular configuration.
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

Sim_groupwise_DAG_Ali_Deane

public Sim_groupwise_DAG_Ali_Deane()
Method Detail

sim

public double sim(Set<org.openrdf.model.URI> setA,
                  Set<org.openrdf.model.URI> setB,
                  SM_Engine rc,
                  SMconf conf)
           throws slib.utils.ex.SLIB_Exception
Description copied from interface: Sim_Groupwise_Direct
Compute the similarity between the given sets of concepts considering a particular configuration.

Parameters:
setA - the first set of vertices
setB - the second set of vertices
rc - the engine used to access specific information used by the measures
conf - the groupwise configuration.
Returns:
the semantic similarity of the pair of groups of concepts
Throws:
slib.utils.ex.SLIB_Exception


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