slib.sml.sm.core.measures.graph.groupwise.dag
Class Sim_groupwise_DAG_TO
java.lang.Object
slib.sml.sm.core.measures.graph.groupwise.dag.Sim_groupwise_DAG_abstract
slib.sml.sm.core.measures.graph.groupwise.dag.Sim_groupwise_DAG_TO
- All Implemented Interfaces:
- Sim_Groupwise, Sim_Groupwise_Direct
public class Sim_groupwise_DAG_TO
- extends Sim_groupwise_DAG_abstract
Mistry M, Pavlidis P: Gene Ontology term overlap as a measure of gene
functional similarity. BMC bioinformatics 2008, 9:327.
Implementation of the Term Overlap measure (TO) which is the cardinality of
the set of vertices composing the graph build from the intersection of the
graphs induced by the ancestors of the two given sets of concepts.
- Author:
- Harispe Sébastien
Method Summary |
double |
sim(Set<org.openrdf.model.URI> setA,
Set<org.openrdf.model.URI> setB,
SM_Engine c,
SMconf conf)
Compute the similarity between the given sets of concepts considering a
particular configuration. |
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Sim_groupwise_DAG_TO
public Sim_groupwise_DAG_TO()
sim
public double sim(Set<org.openrdf.model.URI> setA,
Set<org.openrdf.model.URI> setB,
SM_Engine c,
SMconf conf)
- Description copied from interface:
Sim_Groupwise_Direct
- Compute the similarity between the given sets of concepts considering a
particular configuration.
- Parameters:
setA
- the first set of verticessetB
- the second set of verticesc
- the engine used to access specific information used by the
measuresconf
- the groupwise configuration.
- Returns:
- the semantic similarity of the pair of groups of concepts
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