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A
acceptedTools
- Static variable in class slib.tools.smltoolkit.
SmlToolKitCliCst
ActionParamsUtils
- Class in
slib.tools.smltoolkit.sm.cli.core.utils
ActionParamsUtils()
- Constructor for class slib.tools.smltoolkit.sm.cli.core.utils.
ActionParamsUtils
ActionsParams
- Enum in
slib.tools.smltoolkit.sm.cli.core.utils
admittedProfiles
- Static variable in class slib.tools.smltoolkit.sm.cli.core.cmd.
SmCmdHandlerCst
annotsFormat
- Variable in class slib.tools.smltoolkit.sm.cli.core.utils.
SML_SM_module_XML_block_conf
annotsPath
- Variable in class slib.tools.smltoolkit.sm.cli.core.utils.
SML_SM_module_XML_block_conf
aspect
- Variable in class slib.tools.smltoolkit.sm.cli.core.utils.
SML_SM_module_XML_block_conf
B
buffer
- Variable in class slib.tools.smltoolkit.sm.cli.core.utils.calc.
ThreadResultsQueryLoader
buildSML_FilterGAF2_XML_block(String)
- Static method in class slib.tools.smltoolkit.sm.cli.core.utils.
XMLConfUtils
this parameter can be used to filter the GO terms associated to a gene product when the provided annotation file is in GAF2 format.
buildSML_SM_module_XML_block_GO_PROFILE(SML_SM_module_XML_block_conf)
- Static method in class slib.tools.smltoolkit.sm.cli.core.utils.
XMLConfUtils
Build a String representation of the Semantic Measures XML tag considering the given configuration.
buildSML_SM_module_XML_block_MESH_PROFILE(SML_SM_module_XML_block_conf)
- Static method in class slib.tools.smltoolkit.sm.cli.core.utils.
XMLConfUtils
C
C1_ATTR
- Static variable in class slib.tools.smltoolkit.sm.cli.conf.xml.utils.
Sm_XML_Cst
C2_ATTR
- Static variable in class slib.tools.smltoolkit.sm.cli.conf.xml.utils.
Sm_XML_Cst
call()
- Method in class slib.tools.smltoolkit.sm.cli.core.utils.calc.
ConceptToConcept_Thread
call()
- Method in class slib.tools.smltoolkit.sm.cli.core.utils.calc.
EntityToEntity_Thread
close()
- Method in class slib.tools.smltoolkit.sm.cli.core.utils.
QueryConceptsIterator
ConceptToConcept_Thread
- Class in
slib.tools.smltoolkit.sm.cli.core.utils.calc
ConceptToConcept_Thread(PoolWorker, Collection<QueryEntry>, SmCli, SMQueryParam)
- Constructor for class slib.tools.smltoolkit.sm.cli.core.utils.calc.
ConceptToConcept_Thread
conf
- Variable in class slib.tools.smltoolkit.sm.cli.core.
SmCli
E
E1_ATTR
- Static variable in class slib.tools.smltoolkit.sm.cli.conf.xml.utils.
Sm_XML_Cst
E2_ATTR
- Static variable in class slib.tools.smltoolkit.sm.cli.conf.xml.utils.
Sm_XML_Cst
EntityToEntity_Thread
- Class in
slib.tools.smltoolkit.sm.cli.core.utils.calc
EntityToEntity_Thread(PoolWorker, Collection<QueryEntry>, SmCli, int, SMQueryParam)
- Constructor for class slib.tools.smltoolkit.sm.cli.core.utils.calc.
EntityToEntity_Thread
ERROR_NB_GRAPH_SPEC
- Static variable in class slib.tools.smltoolkit.sm.cli.conf.xml.utils.
Sm_XML_Cst
errorMissingXMLconfOrProfile
- Static variable in class slib.tools.smltoolkit.sm.cli.core.cmd.
SmCmdHandlerCst
errorMissingXMLconfOrProfile
- Static variable in class slib.tools.smltoolkit.sm.cli.profile.go.
SmProfileGOCst
errorTool
- Static variable in class slib.tools.smltoolkit.
SmlToolKitCliCst
execute(String[])
- Method in class slib.tools.smltoolkit.sm.cli.core.
SmCli
execute(String)
- Method in class slib.tools.smltoolkit.sm.cli.core.
SmCli
Execute from configuration file
execute(String[])
- Method in class slib.tools.smltoolkit.sm.cli.profile.go.
SmProfile_GO
execute(String[])
- Method in class slib.tools.smltoolkit.sm.cli.profile.mesh.
SmProfile_MeSH
execute(String[])
- Method in interface slib.tools.smltoolkit.
SmlModuleCLI
F
FileWriterUtil
- Class in
slib.tools.smltoolkit.sm.cli.core.utils
Dummy class used to write a String into a file
FileWriterUtil()
- Constructor for class slib.tools.smltoolkit.sm.cli.core.utils.
FileWriterUtil
filter
- Variable in class slib.tools.smltoolkit.sm.cli.core.utils.
SML_SM_module_XML_block_conf
FLAG_ATTR
- Static variable in class slib.tools.smltoolkit.sm.cli.conf.xml.utils.
Sm_XML_Cst
FORCE_EXEC_ATTR
- Static variable in class slib.tools.smltoolkit.sm.cli.conf.xml.utils.
Sm_XML_Cst
G
gConfGroupwise
- Variable in class slib.tools.smltoolkit.sm.cli.conf.xml.loader.
Sm_XMLConfLoader
gConfICs
- Variable in class slib.tools.smltoolkit.sm.cli.conf.xml.loader.
Sm_XMLConfLoader
gConfOperators
- Variable in class slib.tools.smltoolkit.sm.cli.conf.xml.loader.
Sm_XMLConfLoader
gConfPairwise
- Variable in class slib.tools.smltoolkit.sm.cli.conf.xml.loader.
Sm_XMLConfLoader
gConfQueries
- Variable in class slib.tools.smltoolkit.sm.cli.conf.xml.loader.
Sm_XMLConfLoader
getAction(String)
- Static method in class slib.tools.smltoolkit.sm.cli.core.utils.
ActionParamsUtils
Try to associate an
ActionsParams
to the given String.
getBenchSize()
- Method in class slib.tools.smltoolkit.sm.cli.conf.xml.loader.
Sm_XMLConfLoader
getCachePairwiseResults()
- Method in class slib.tools.smltoolkit.sm.cli.conf.xml.loader.
Sm_XMLConfLoader
getGraph()
- Method in class slib.tools.smltoolkit.sm.cli.core.
SmCli
getiAccessor()
- Method in class slib.tools.smltoolkit.sm.cli.core.
SmCli
getICconf(String)
- Method in class slib.tools.smltoolkit.sm.cli.core.
SmCli
getId()
- Method in class slib.tools.smltoolkit.sm.cli.core.utils.
SMQueryParam
getInfile()
- Method in class slib.tools.smltoolkit.sm.cli.core.utils.
SMQueryParam
getJobSize()
- Method in class slib.tools.smltoolkit.sm.cli.core.utils.calc.
ThreadResultsQueryLoader
getNoAnnotAction()
- Method in class slib.tools.smltoolkit.sm.cli.core.utils.
SMQueryParam
getNoAnnotationScore()
- Method in class slib.tools.smltoolkit.sm.cli.core.utils.
SMQueryParam
getNoFoundAction()
- Method in class slib.tools.smltoolkit.sm.cli.core.utils.
SMQueryParam
getNoFoundScore()
- Method in class slib.tools.smltoolkit.sm.cli.core.utils.
SMQueryParam
getNumberQueries()
- Method in class slib.tools.smltoolkit.sm.cli.core.utils.
QueryConceptsIterator
getOutfile()
- Method in class slib.tools.smltoolkit.sm.cli.core.utils.
SMQueryParam
getSetValue(String)
- Static method in class slib.tools.smltoolkit.sm.cli.core.utils.
ActionParamsUtils
getSetValue()
- Method in class slib.tools.smltoolkit.sm.cli.core.utils.calc.
ThreadResultsQueryLoader
getSkipped()
- Method in class slib.tools.smltoolkit.sm.cli.core.utils.calc.
ThreadResultsQueryLoader
getSmconf()
- Method in class slib.tools.smltoolkit.sm.cli.profile.go.
SmProfileGOHandler
getSmconf()
- Method in class slib.tools.smltoolkit.sm.cli.profile.mesh.
SmProfileMeSHHandler
getType()
- Method in class slib.tools.smltoolkit.sm.cli.core.utils.
SMQueryParam
gmShortFlag
- Variable in class slib.tools.smltoolkit.sm.cli.core.utils.
SML_SM_module_XML_block_conf
graphURI
- Variable in class slib.tools.smltoolkit.sm.cli.conf.xml.loader.
Sm_XMLConfLoader
graphURI
- Variable in class slib.tools.smltoolkit.sm.cli.core.utils.
SML_SM_module_XML_block_conf
H
hasNext()
- Method in class slib.tools.smltoolkit.sm.cli.core.utils.
QueryConceptsIterator
help
- Static variable in class slib.tools.smltoolkit.
SmlToolKitCliCst
I
IC_ATTR
- Static variable in class slib.tools.smltoolkit.sm.cli.conf.xml.utils.
Sm_XML_Cst
IC_ATTR_VALUE_FULL_LIST
- Static variable in class slib.tools.smltoolkit.sm.cli.conf.xml.utils.
Sm_XML_Cst
Value to specify to compute measures using all loaded IC
IC_PROB
- Static variable in class slib.tools.smltoolkit.sm.cli.conf.xml.utils.
Sm_XML_Cst
IC_TAG
- Static variable in class slib.tools.smltoolkit.sm.cli.conf.xml.utils.
Sm_XML_Cst
ICS_TAG
- Static variable in class slib.tools.smltoolkit.sm.cli.conf.xml.utils.
Sm_XML_Cst
icShortFlag
- Variable in class slib.tools.smltoolkit.sm.cli.core.utils.
SML_SM_module_XML_block_conf
isOutputBaseName()
- Method in class slib.tools.smltoolkit.sm.cli.core.utils.
SMQueryParam
isQuiet()
- Method in class slib.tools.smltoolkit.sm.cli.conf.xml.loader.
Sm_XMLConfLoader
isUseLoadedURIprefixes()
- Method in class slib.tools.smltoolkit.sm.cli.core.utils.
SMQueryParam
isUseLoadedURIprefixesOutput()
- Method in class slib.tools.smltoolkit.sm.cli.core.utils.
SMQueryParam
M
main(String[])
- Static method in class slib.tools.smltoolkit.
SmlToolKitCli
MEASURE_TAG
- Static variable in class slib.tools.smltoolkit.sm.cli.conf.xml.utils.
Sm_XML_Cst
MEASURES_TAG
- Static variable in class slib.tools.smltoolkit.sm.cli.conf.xml.utils.
Sm_XML_Cst
mtype
- Variable in class slib.tools.smltoolkit.sm.cli.core.utils.
SML_SM_module_XML_block_conf
N
next()
- Method in class slib.tools.smltoolkit.sm.cli.core.utils.
QueryConceptsIterator
nextValids(int)
- Method in class slib.tools.smltoolkit.sm.cli.core.utils.
QueryConceptsIterator
noAnnots
- Variable in class slib.tools.smltoolkit.sm.cli.core.utils.
SML_SM_module_XML_block_conf
notFound
- Variable in class slib.tools.smltoolkit.sm.cli.core.utils.
SML_SM_module_XML_block_conf
notrannots
- Variable in class slib.tools.smltoolkit.sm.cli.core.utils.
SML_SM_module_XML_block_conf
notrkr
- Variable in class slib.tools.smltoolkit.sm.cli.core.utils.
SML_SM_module_XML_block_conf
O
ontologyFormat
- Variable in class slib.tools.smltoolkit.sm.cli.core.utils.
SML_SM_module_XML_block_conf
ontologyPath
- Variable in class slib.tools.smltoolkit.sm.cli.core.utils.
SML_SM_module_XML_block_conf
OPT_BENCH_SIZE_ATTR
- Static variable in class slib.tools.smltoolkit.sm.cli.conf.xml.utils.
Sm_XML_Cst
OPT_CACHE_PAIRWISE_ATTR
- Static variable in class slib.tools.smltoolkit.sm.cli.conf.xml.utils.
Sm_XML_Cst
OPT_MODULE_TAG
- Static variable in class slib.tools.smltoolkit.sm.cli.conf.xml.utils.
Sm_XML_Cst
OPT_NO_ANNOTS_ATTR
- Static variable in class slib.tools.smltoolkit.sm.cli.conf.xml.utils.
Sm_XML_Cst
OPT_NOT_FOUND_ATTR
- Static variable in class slib.tools.smltoolkit.sm.cli.conf.xml.utils.
Sm_XML_Cst
OPT_QUIET_ATTR
- Static variable in class slib.tools.smltoolkit.sm.cli.conf.xml.utils.
Sm_XML_Cst
output
- Variable in class slib.tools.smltoolkit.sm.cli.core.utils.
SML_SM_module_XML_block_conf
OUTPUT_BASENAME_ATT
- Static variable in class slib.tools.smltoolkit.sm.cli.conf.xml.utils.
Sm_XML_Cst
P
PAIRWISE_MEASURE_ATTR
- Static variable in class slib.tools.smltoolkit.sm.cli.conf.xml.utils.
Sm_XML_Cst
PAIRWISE_MEASURE_ATTR_VALUE_FULL_LIST
- Static variable in class slib.tools.smltoolkit.sm.cli.conf.xml.utils.
Sm_XML_Cst
Value to specify to compute measures using all loaded IC
pmShortFlag
- Variable in class slib.tools.smltoolkit.sm.cli.core.utils.
SML_SM_module_XML_block_conf
prefixURI_Attr
- Variable in class slib.tools.smltoolkit.sm.cli.core.utils.
SML_SM_module_XML_block_conf
processArgs(String[])
- Method in class slib.tools.smltoolkit.sm.cli.core.cmd.
SmCmdHandler
processArgs(String[])
- Method in class slib.tools.smltoolkit.sm.cli.profile.go.
SmProfileGOHandler
processArgs(String[])
- Method in class slib.tools.smltoolkit.sm.cli.profile.mesh.
SmProfileMeSHHandler
processArgs(String[])
- Method in class slib.tools.smltoolkit.
SmlToolKitCli
profile
- Variable in class slib.tools.smltoolkit.sm.cli.core.cmd.
SmCmdHandler
properties_file_name
- Static variable in class slib.tools.smltoolkit.
SmlToolKitCst
See properties file and POM for constant values
properties_prefix
- Static variable in class slib.tools.smltoolkit.sm.cli.core.utils.
SmToolkitCst
properties_prefix
- Static variable in class slib.tools.smltoolkit.sm.cli.profile.go.
SmToolkitGOCst
properties_prefix
- Static variable in class slib.tools.smltoolkit.sm.cli.profile.mesh.
SmToolkitMeSHCst
properties_prefix
- Static variable in class slib.tools.smltoolkit.
SmlToolKitCst
Q
queries
- Variable in class slib.tools.smltoolkit.sm.cli.core.utils.
SML_SM_module_XML_block_conf
QUERIES_TAG
- Static variable in class slib.tools.smltoolkit.sm.cli.conf.xml.utils.
Sm_XML_Cst
QUERIES_TYPE_CTOC
- Static variable in class slib.tools.smltoolkit.sm.cli.conf.xml.utils.
Sm_XML_Cst
QUERIES_TYPE_CTOC_FULL
- Static variable in class slib.tools.smltoolkit.sm.cli.conf.xml.utils.
Sm_XML_Cst
QUERIES_TYPE_OTOO
- Static variable in class slib.tools.smltoolkit.sm.cli.conf.xml.utils.
Sm_XML_Cst
QUERY_TAG
- Static variable in class slib.tools.smltoolkit.sm.cli.conf.xml.utils.
Sm_XML_Cst
QueryConceptsIterator
- Class in
slib.tools.smltoolkit.sm.cli.core.utils
Utility used to iterate along the pairs of concepts which can be build according to the set of concepts (CLASS) composing the graph.
QueryConceptsIterator(Set<URI>)
- Constructor for class slib.tools.smltoolkit.sm.cli.core.utils.
QueryConceptsIterator
QUIET
- Variable in class slib.tools.smltoolkit.sm.cli.core.
SmCli
quiet
- Variable in class slib.tools.smltoolkit.sm.cli.core.utils.
SML_SM_module_XML_block_conf
S
setAnnotsFormat(String)
- Method in class slib.tools.smltoolkit.sm.cli.core.utils.
SML_SM_module_XML_block_conf
setAnnotsPath(String)
- Method in class slib.tools.smltoolkit.sm.cli.core.utils.
SML_SM_module_XML_block_conf
setAspect(String)
- Method in class slib.tools.smltoolkit.sm.cli.core.utils.
SML_SM_module_XML_block_conf
setFilter(String)
- Method in class slib.tools.smltoolkit.sm.cli.core.utils.
SML_SM_module_XML_block_conf
setGmShortFlag(String)
- Method in class slib.tools.smltoolkit.sm.cli.core.utils.
SML_SM_module_XML_block_conf
setGraphURI(String)
- Method in class slib.tools.smltoolkit.sm.cli.core.utils.
SML_SM_module_XML_block_conf
setIcShortFlag(String)
- Method in class slib.tools.smltoolkit.sm.cli.core.utils.
SML_SM_module_XML_block_conf
setInfile(String)
- Method in class slib.tools.smltoolkit.sm.cli.core.utils.
SMQueryParam
setJobSize(int)
- Method in class slib.tools.smltoolkit.sm.cli.core.utils.calc.
ThreadResultsQueryLoader
setMtype(String)
- Method in class slib.tools.smltoolkit.sm.cli.core.utils.
SML_SM_module_XML_block_conf
setNoAnnotAction(ActionsParams)
- Method in class slib.tools.smltoolkit.sm.cli.core.utils.
SMQueryParam
setNoAnnotationScore(double)
- Method in class slib.tools.smltoolkit.sm.cli.core.utils.
SMQueryParam
setNoAnnots(String)
- Method in class slib.tools.smltoolkit.sm.cli.core.utils.
SML_SM_module_XML_block_conf
setNoFoundAction(ActionsParams)
- Method in class slib.tools.smltoolkit.sm.cli.core.utils.
SMQueryParam
setNoFoundScore(double)
- Method in class slib.tools.smltoolkit.sm.cli.core.utils.
SMQueryParam
setNotFound(String)
- Method in class slib.tools.smltoolkit.sm.cli.core.utils.
SML_SM_module_XML_block_conf
setNoTR_Annots(String)
- Method in class slib.tools.smltoolkit.sm.cli.core.utils.
SML_SM_module_XML_block_conf
setNoTR_KR(String)
- Method in class slib.tools.smltoolkit.sm.cli.core.utils.
SML_SM_module_XML_block_conf
setOntologyFormat(String)
- Method in class slib.tools.smltoolkit.sm.cli.core.utils.
SML_SM_module_XML_block_conf
setOntologyPath(String)
- Method in class slib.tools.smltoolkit.sm.cli.core.utils.
SML_SM_module_XML_block_conf
setOutfile(String)
- Method in class slib.tools.smltoolkit.sm.cli.core.utils.
SMQueryParam
setOutput(String)
- Method in class slib.tools.smltoolkit.sm.cli.core.utils.
SML_SM_module_XML_block_conf
setOutputBaseName(boolean)
- Method in class slib.tools.smltoolkit.sm.cli.core.utils.
SMQueryParam
setPmShortFlag(String)
- Method in class slib.tools.smltoolkit.sm.cli.core.utils.
SML_SM_module_XML_block_conf
setPrefixURIAttribut(String)
- Method in class slib.tools.smltoolkit.sm.cli.core.utils.
SML_SM_module_XML_block_conf
setQueries(String)
- Method in class slib.tools.smltoolkit.sm.cli.core.utils.
SML_SM_module_XML_block_conf
setQuiet(String)
- Method in class slib.tools.smltoolkit.sm.cli.core.utils.
SML_SM_module_XML_block_conf
setSetValue(int)
- Method in class slib.tools.smltoolkit.sm.cli.core.utils.calc.
ThreadResultsQueryLoader
setSkipped(int)
- Method in class slib.tools.smltoolkit.sm.cli.core.utils.calc.
ThreadResultsQueryLoader
setThreads(String)
- Method in class slib.tools.smltoolkit.sm.cli.core.utils.
SML_SM_module_XML_block_conf
setType(String)
- Method in class slib.tools.smltoolkit.sm.cli.core.utils.
SMQueryParam
setUseLoadedURIprefixes(boolean)
- Method in class slib.tools.smltoolkit.sm.cli.core.utils.
SMQueryParam
setUseLoadedURIprefixesOutput(boolean)
- Method in class slib.tools.smltoolkit.sm.cli.core.utils.
SMQueryParam
simManager
- Variable in class slib.tools.smltoolkit.sm.cli.core.
SmCli
slib.tools.smltoolkit
- package slib.tools.smltoolkit
slib.tools.smltoolkit.sm.cli.conf.xml.loader
- package slib.tools.smltoolkit.sm.cli.conf.xml.loader
slib.tools.smltoolkit.sm.cli.conf.xml.utils
- package slib.tools.smltoolkit.sm.cli.conf.xml.utils
slib.tools.smltoolkit.sm.cli.core
- package slib.tools.smltoolkit.sm.cli.core
slib.tools.smltoolkit.sm.cli.core.cmd
- package slib.tools.smltoolkit.sm.cli.core.cmd
slib.tools.smltoolkit.sm.cli.core.utils
- package slib.tools.smltoolkit.sm.cli.core.utils
slib.tools.smltoolkit.sm.cli.core.utils.calc
- package slib.tools.smltoolkit.sm.cli.core.utils.calc
slib.tools.smltoolkit.sm.cli.profile.go
- package slib.tools.smltoolkit.sm.cli.profile.go
slib.tools.smltoolkit.sm.cli.profile.mesh
- package slib.tools.smltoolkit.sm.cli.profile.mesh
Sm_XML_Cst
- Class in
slib.tools.smltoolkit.sm.cli.conf.xml.utils
Sm_XML_Cst()
- Constructor for class slib.tools.smltoolkit.sm.cli.conf.xml.utils.
Sm_XML_Cst
Sm_XMLConfLoader
- Class in
slib.tools.smltoolkit.sm.cli.conf.xml.loader
Sm_XMLConfLoader(String)
- Constructor for class slib.tools.smltoolkit.sm.cli.conf.xml.loader.
Sm_XMLConfLoader
SmCli
- Class in
slib.tools.smltoolkit.sm.cli.core
SmCli()
- Constructor for class slib.tools.smltoolkit.sm.cli.core.
SmCli
SmCmdHandler
- Class in
slib.tools.smltoolkit.sm.cli.core.cmd
SmCmdHandler()
- Constructor for class slib.tools.smltoolkit.sm.cli.core.cmd.
SmCmdHandler
SmCmdHandlerCst
- Class in
slib.tools.smltoolkit.sm.cli.core.cmd
SmCmdHandlerCst()
- Constructor for class slib.tools.smltoolkit.sm.cli.core.cmd.
SmCmdHandlerCst
SML_MODULE
- Static variable in class slib.tools.smltoolkit.sm.cli.conf.xml.utils.
Sm_XML_Cst
SML_SM
- Static variable in class slib.tools.smltoolkit.sm.cli.conf.xml.utils.
Sm_XML_Cst
SML_SM_include
- Static variable in class slib.tools.smltoolkit.sm.cli.conf.xml.utils.
Sm_XML_Cst
SML_SM_module_XML_block_conf
- Class in
slib.tools.smltoolkit.sm.cli.core.utils
SML_SM_module_XML_block_conf()
- Constructor for class slib.tools.smltoolkit.sm.cli.core.utils.
SML_SM_module_XML_block_conf
SML_TAG
- Static variable in class slib.tools.smltoolkit.sm.cli.conf.xml.utils.
Sm_XML_Cst
SmlModuleCLI
- Interface in
slib.tools.smltoolkit
SmlToolKitCli
- Class in
slib.tools.smltoolkit
Semantic Measures Library Toolkit Command Line Interface
SmlToolKitCli()
- Constructor for class slib.tools.smltoolkit.
SmlToolKitCli
SmlToolKitCliCst
- Class in
slib.tools.smltoolkit
SmlToolKitCliCst()
- Constructor for class slib.tools.smltoolkit.
SmlToolKitCliCst
SmlToolKitCst
- Class in
slib.tools.smltoolkit
Constant of the Semantic Framework Module
SmlToolKitCst()
- Constructor for class slib.tools.smltoolkit.
SmlToolKitCst
SmProfile_GO
- Class in
slib.tools.smltoolkit.sm.cli.profile.go
SmProfile_GO()
- Constructor for class slib.tools.smltoolkit.sm.cli.profile.go.
SmProfile_GO
SmProfile_MeSH
- Class in
slib.tools.smltoolkit.sm.cli.profile.mesh
SmProfile_MeSH()
- Constructor for class slib.tools.smltoolkit.sm.cli.profile.mesh.
SmProfile_MeSH
SmProfileGOCst
- Class in
slib.tools.smltoolkit.sm.cli.profile.go
SmProfileGOCst()
- Constructor for class slib.tools.smltoolkit.sm.cli.profile.go.
SmProfileGOCst
SmProfileGOHandler
- Class in
slib.tools.smltoolkit.sm.cli.profile.go
SmProfileGOHandler()
- Constructor for class slib.tools.smltoolkit.sm.cli.profile.go.
SmProfileGOHandler
SmProfileMeSHCst
- Class in
slib.tools.smltoolkit.sm.cli.profile.mesh
SmProfileMeSHCst()
- Constructor for class slib.tools.smltoolkit.sm.cli.profile.mesh.
SmProfileMeSHCst
SmProfileMeSHHandler
- Class in
slib.tools.smltoolkit.sm.cli.profile.mesh
SmProfileMeSHHandler(String[])
- Constructor for class slib.tools.smltoolkit.sm.cli.profile.mesh.
SmProfileMeSHHandler
SMQueryParam
- Class in
slib.tools.smltoolkit.sm.cli.core.utils
SMQueryParam(String)
- Constructor for class slib.tools.smltoolkit.sm.cli.core.utils.
SMQueryParam
SmToolkitCst
- Class in
slib.tools.smltoolkit.sm.cli.core.utils
SmToolkitCst()
- Constructor for class slib.tools.smltoolkit.sm.cli.core.utils.
SmToolkitCst
SmToolkitGOCst
- Class in
slib.tools.smltoolkit.sm.cli.profile.go
SmToolkitGOCst()
- Constructor for class slib.tools.smltoolkit.sm.cli.profile.go.
SmToolkitGOCst
SmToolkitMeSHCst
- Class in
slib.tools.smltoolkit.sm.cli.profile.mesh
SmToolkitMeSHCst()
- Constructor for class slib.tools.smltoolkit.sm.cli.profile.mesh.
SmToolkitMeSHCst
SMutils
- Class in
slib.tools.smltoolkit.sm.cli.core.utils
SMutils()
- Constructor for class slib.tools.smltoolkit.sm.cli.core.utils.
SMutils
T
ThreadResultsQueryLoader
- Class in
slib.tools.smltoolkit.sm.cli.core.utils.calc
ThreadResultsQueryLoader(int)
- Constructor for class slib.tools.smltoolkit.sm.cli.core.utils.calc.
ThreadResultsQueryLoader
threads
- Variable in class slib.tools.smltoolkit.sm.cli.core.utils.
SML_SM_module_XML_block_conf
throwArithmeticCriticalException(SMconf, URI, URI, Object)
- Static method in class slib.tools.smltoolkit.sm.cli.core.utils.
SMutils
throwArithmeticCriticalException(SMconf, SMconf, URI, URI, Object)
- Static method in class slib.tools.smltoolkit.sm.cli.core.utils.
SMutils
tool
- Variable in class slib.tools.smltoolkit.
SmlToolKitCli
tool
- Static variable in class slib.tools.smltoolkit.
SmlToolKitCliCst
toolArg
- Static variable in class slib.tools.smltoolkit.
SmlToolKitCliCst
ToolName_SM
- Static variable in class slib.tools.smltoolkit.
SmlToolKitCliCst
toString()
- Method in class slib.tools.smltoolkit.sm.cli.core.utils.
SMQueryParam
TYPE_VALUE_GROUPWISE
- Static variable in class slib.tools.smltoolkit.sm.cli.conf.xml.utils.
Sm_XML_Cst
TYPE_VALUE_PAIRWISE
- Static variable in class slib.tools.smltoolkit.sm.cli.conf.xml.utils.
Sm_XML_Cst
U
USE_URI_PREFIX_ATTR
- Static variable in class slib.tools.smltoolkit.sm.cli.conf.xml.utils.
Sm_XML_Cst
USE_URI_PREFIX_OUTPUT_ATTR
- Static variable in class slib.tools.smltoolkit.sm.cli.conf.xml.utils.
Sm_XML_Cst
V
valueOf(String)
- Static method in enum slib.tools.smltoolkit.sm.cli.core.utils.
ActionsParams
Returns the enum constant of this type with the specified name.
values()
- Static method in enum slib.tools.smltoolkit.sm.cli.core.utils.
ActionsParams
Returns an array containing the constants of this enum type, in the order they are declared.
version
- Static variable in class slib.tools.smltoolkit.
SmlToolKitCliCst
W
writeToFile(String, String)
- Static method in class slib.tools.smltoolkit.sm.cli.core.utils.
FileWriterUtil
X
xmlconf
- Variable in class slib.tools.smltoolkit.sm.cli.profile.go.
SmProfile_GO
xmlconf
- Variable in class slib.tools.smltoolkit.sm.cli.profile.mesh.
SmProfile_MeSH
xmlConfAsString
- Variable in class slib.tools.smltoolkit.sm.cli.core.cmd.
SmCmdHandler
xmlConfFile
- Variable in class slib.tools.smltoolkit.sm.cli.core.cmd.
SmCmdHandler
XMLConfUtils
- Class in
slib.tools.smltoolkit.sm.cli.core.utils
XMLConfUtils()
- Constructor for class slib.tools.smltoolkit.sm.cli.core.utils.
XMLConfUtils
_
_appCmdName
- Static variable in class slib.tools.smltoolkit.
SmlToolKitCliCst
_debugMode
- Static variable in class slib.tools.smltoolkit.
SmlToolKitCliCst
_help
- Static variable in class slib.tools.smltoolkit.sm.cli.core.cmd.
SmCmdHandlerCst
_optionsOrder
- Static variable in class slib.tools.smltoolkit.
SmlToolKitCliCst
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