A B C E G I M R S T U 

A

add(String, URI) - Method in class slib.indexer.wordnet.IndexerWordNetBasic
 
add(String, Collection<URI>) - Method in class slib.indexer.wordnet.IndexerWordNetBasic
 
addDescription(URI, URIDescription) - Method in class slib.indexer.IndexHash
Associate a description to the given URI
addDescription(String) - Method in interface slib.indexer.URIDescription
Add a description
addDescription(String) - Method in class slib.indexer.URIDescriptionBasic
 
addDescriptions(Collection<String>) - Method in interface slib.indexer.URIDescription
Add a collection of descriptions
addDescriptions(String[]) - Method in interface slib.indexer.URIDescription
Add an array of descriptions
addDescriptions(Collection<String>) - Method in class slib.indexer.URIDescriptionBasic
 
addDescriptions(String[]) - Method in class slib.indexer.URIDescriptionBasic
 
addTreeNumber(String) - Method in class slib.indexer.mesh.MeshConcept
 

B

buildIndex(URIFactory, String, String) - Static method in class slib.indexer.mesh.Indexer_MESH_XML
Build an index for the descriptors specified in the MeSH XML.
buildIndex(URIFactory, String, String) - Static method in class slib.indexer.obo.IndexerOBO
Build an index for the terms specified in an OBO ontology.
buildIndex(URIFactory, G, String, String, boolean) - Static method in class slib.indexer.snomed_ct.IndexerSNOMEDCT_RF2
Only load an index for the URI already loaded
buildIndex(URIFactory, String, String, G, boolean) - Static method in class slib.indexer.snomed_ct.IndexerSNOMEDCT_RF2
Same as builIndex removing the index not associated to a loaded vertex

C

characters(char[], int, int) - Method in class slib.indexer.mesh.MeshXMLHandler
 
concept - Variable in class slib.indexer.mesh.MeshXMLHandler
 
containsDescriptionFor(URI) - Method in class slib.indexer.IndexHash
Return true if the given URI is associated to a description.

E

endElement(String, String, String) - Method in class slib.indexer.mesh.MeshXMLHandler
 

G

get(String) - Method in class slib.indexer.wordnet.IndexerWordNetBasic
 
getAssociatedURI() - Method in interface slib.indexer.URIDescription
 
getAssociatedURI() - Method in class slib.indexer.URIDescriptionBasic
 
getDescription(URI) - Method in class slib.indexer.IndexHash
Access to the description associated to a specific URI
getDescriptions() - Method in interface slib.indexer.URIDescription
Access to the descriptions associated to the object
getDescriptions() - Method in class slib.indexer.URIDescriptionBasic
 
getDescriptorName() - Method in class slib.indexer.mesh.MeshConcept
 
getDescriptorUI() - Method in class slib.indexer.mesh.MeshConcept
 
getIndex() - Method in class slib.indexer.wordnet.IndexerWordNetBasic
 
getMapping() - Method in class slib.indexer.IndexHash
Access to the Map which stores the description of each resource.
getPreferredDescription() - Method in interface slib.indexer.URIDescription
Access to the preferred description of the resource.
getPreferredDescription() - Method in class slib.indexer.URIDescriptionBasic
 

I

Indexer_MESH_XML - Class in slib.indexer.mesh
Class used to build an index for the descriptors specified in the MeSH XML.
Indexer_MESH_XML() - Constructor for class slib.indexer.mesh.Indexer_MESH_XML
 
IndexerOBO - Class in slib.indexer.obo
Class used to build an index for the terms specified in an OBO ontology
IndexerOBO() - Constructor for class slib.indexer.obo.IndexerOBO
 
IndexerSNOMEDCT_RF2 - Class in slib.indexer.snomed_ct
 
IndexerSNOMEDCT_RF2() - Constructor for class slib.indexer.snomed_ct.IndexerSNOMEDCT_RF2
 
IndexerWordNetBasic - Class in slib.indexer.wordnet
DUMMY INDEXER USED TO DEBUG.
IndexerWordNetBasic() - Constructor for class slib.indexer.wordnet.IndexerWordNetBasic
 
IndexerWordNetBasic(URIFactory, G, String) - Constructor for class slib.indexer.wordnet.IndexerWordNetBasic
 
IndexHash - Class in slib.indexer
Class used to associate an URI to an object which contains its descriptions as String values.
IndexHash() - Constructor for class slib.indexer.IndexHash
 

M

MeshConcept - Class in slib.indexer.mesh
Simple representation of a Mesh Concept
MeshConcept() - Constructor for class slib.indexer.mesh.MeshConcept
 
MeshXMLHandler - Class in slib.indexer.mesh
 
MeshXMLHandler(Set<MeshConcept>) - Constructor for class slib.indexer.mesh.MeshXMLHandler
 

R

removeDescription(String) - Method in interface slib.indexer.URIDescription
Remove a description.
removeDescription(String) - Method in class slib.indexer.URIDescriptionBasic
 
removeDescriptions(Collection<String>) - Method in interface slib.indexer.URIDescription
Remove a collection of descriptions.
removeDescriptions(Collection<String>) - Method in class slib.indexer.URIDescriptionBasic
 

S

setDescriptorName(String) - Method in class slib.indexer.mesh.MeshConcept
 
setDescriptorUI(String) - Method in class slib.indexer.mesh.MeshConcept
 
setPreferredDescription(String) - Method in interface slib.indexer.URIDescription
Set the preferred description of the resource.
setPreferredDescription(String) - Method in class slib.indexer.URIDescriptionBasic
 
slib.indexer - package slib.indexer
 
slib.indexer.mesh - package slib.indexer.mesh
 
slib.indexer.obo - package slib.indexer.obo
 
slib.indexer.snomed_ct - package slib.indexer.snomed_ct
 
slib.indexer.wordnet - package slib.indexer.wordnet
 
startElement(String, String, String, Attributes) - Method in class slib.indexer.mesh.MeshXMLHandler
 

T

toString() - Method in class slib.indexer.mesh.MeshConcept
 

U

URIDescription - Interface in slib.indexer
Interface which defines a simple way to store String values associated to a resource which is identified by an URI.
URIDescriptionBasic - Class in slib.indexer
In-memory implementation of the interface URIDescription
URIDescriptionBasic(URI) - Constructor for class slib.indexer.URIDescriptionBasic
Create a description for the given URI
URIDescriptionBasic(URI, String) - Constructor for class slib.indexer.URIDescriptionBasic
Create a description for the given URI with the given description as preferred description.
A B C E G I M R S T U 

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