public class GraphLoader_GAF_2 extends Object implements GraphLoader
Modifier and Type | Field and Description |
---|---|
static int |
ANNOTATION_XP |
static int |
ASPECT |
static int |
ASSIGNED_BY |
static int |
DATE |
static int |
DB |
static int |
DB_OBJECT_ID |
static int |
DB_OBJECT_NAME |
static int |
DB_OBJECT_SYMBOL |
static int |
DB_OBJECT_SYNONYM |
static int |
DB_OBJECT_TYPE |
static int |
EVIDENCE_CODE |
static int |
GENE_PRODUCT_ISOFORM |
static int |
GOID |
static int |
QUALIFIER |
static int |
REFERENCE |
static int |
TAXON |
static int |
WITH |
Constructor and Description |
---|
GraphLoader_GAF_2() |
public static final int DB
public static final int DB_OBJECT_ID
public static final int DB_OBJECT_SYMBOL
public static final int QUALIFIER
public static final int GOID
public static final int REFERENCE
public static final int EVIDENCE_CODE
public static final int WITH
public static final int ASPECT
public static final int DB_OBJECT_NAME
public static final int DB_OBJECT_SYNONYM
public static final int DB_OBJECT_TYPE
public static final int TAXON
public static final int DATE
public static final int ASSIGNED_BY
public static final int ANNOTATION_XP
public static final int GENE_PRODUCT_ISOFORM
public void populate(GDataConf conf, slib.sglib.model.graph.G graph) throws slib.utils.ex.SLIB_Ex_Critic
G
containing the concepts to consider. A FilterGraph_GAF2
can be
associated to a configuration in order to define restrictions to consider
during the parsing (e.g. taxons, Evidence Code, origin knowledge base)populate
in interface GraphLoader
conf
- object defining a configuration. If the configuration file
define a Filter
FilterGraph_GAF2
, it will be evaluated
during the parsing.graph
- a graph defining the concepts to consider, can be set to
null if no mapping restriction have to be take into account If a graph is
specified only annotation corresponding a graph Node will be loaded.slib.utils.ex.SLIB_Ex_Critic
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