A C D E F G H I L M O P Q R S T V W 

A

addConstraint(CSV_StatementTemplate_Constraint) - Method in class slib.sglib.io.loader.csv.CSV_StatementTemplate
 
addECtoExclude(String) - Method in class slib.sglib.io.loader.utils.filter.graph.gaf2.FilterGraph_GAF2
 
addECtoExclude(Collection<String>) - Method in class slib.sglib.io.loader.utils.filter.graph.gaf2.FilterGraph_GAF2
 
addFilter(Filter) - Method in class slib.sglib.io.loader.utils.filter.graph.repo.FilterRepository
 
addGAction(GAction) - Method in class slib.sglib.io.conf.GraphConf
 
addGDataConf(GDataConf) - Method in class slib.sglib.io.conf.GraphConf
 
addMapping(int, String) - Method in class slib.sglib.io.loader.csv.GraphLoader_CSV
 
addRel(String, String) - Method in class slib.sglib.io.loader.bio.obo.utils.OboTerm
 
addStatementTemplate(int, int, URI) - Method in class slib.sglib.io.loader.csv.GraphLoader_CSV
 
addTaxons(String) - Method in class slib.sglib.io.loader.utils.filter.graph.gaf2.FilterGraph_GAF2
 
addTaxons(Collection<String>) - Method in class slib.sglib.io.loader.utils.filter.graph.gaf2.FilterGraph_GAF2
 
addTreeNumber(String) - Method in class slib.sglib.io.loader.bio.mesh.MeshConcept
 
ANNOTATION_XP - Static variable in class slib.sglib.io.loader.bio.gaf2.GraphLoader_GAF_2
 
areValid(Collection<String>, String) - Static method in class slib.sglib.io.loader.bio.gaf2.EvidenceCodeRules
Evaluate if a particular EC respect restrictions contains in a Collection of String defining invalid EC EC hierarchy is considered during the evaluation
ARG_CONCEPT_FILE - Static variable in class slib.sglib.io.loader.bio.snomedct.GraphLoaderSnomedCT_RF2
 
ARG_LOAD_INACTIVE_CONCEPTS - Static variable in class slib.sglib.io.loader.bio.snomedct.GraphLoaderSnomedCT_RF2
 
ARG_LOAD_INACTIVE_RELATIONSHIPS - Static variable in class slib.sglib.io.loader.bio.snomedct.GraphLoaderSnomedCT_RF2
 
ARG_PREFIX - Static variable in class slib.sglib.io.loader.bio.mesh.GraphLoader_MESH_XML
 
ARG_PREFIX - Static variable in class slib.sglib.io.loader.bio.snomedct.GraphLoaderSnomedCT_RF2
 
ARG_RELATIONSHIP_FILE - Static variable in class slib.sglib.io.loader.bio.snomedct.GraphLoaderSnomedCT_RF2
 
ASPECT - Static variable in class slib.sglib.io.loader.bio.gaf2.GraphLoader_GAF_2
 
ASSIGNED_BY - Static variable in class slib.sglib.io.loader.bio.gaf2.GraphLoader_GAF_2
 

C

characters(char[], int, int) - Method in class slib.sglib.io.loader.bio.mesh.MeshXMLHandler
 
clear() - Method in class slib.sglib.io.loader.utils.filter.graph.repo.FilterRepository
Remove loaded filters
compareTo(Object) - Method in class slib.sglib.io.conf.GraphConf
 
concept - Variable in class slib.sglib.io.loader.bio.mesh.MeshXMLHandler
 
containsFilter(String) - Method in class slib.sglib.io.loader.utils.filter.graph.repo.FilterRepository
 
createGraph(URI) - Static method in class slib.sglib.io.loader.GraphLoaderGeneric
Create a graph and register it.
CSV_Mapping - Class in slib.sglib.io.loader.csv
 
CSV_Mapping(int, String) - Constructor for class slib.sglib.io.loader.csv.CSV_Mapping
 
CSV_StatementTemplate - Class in slib.sglib.io.loader.csv
 
CSV_StatementTemplate(int, int, URI) - Constructor for class slib.sglib.io.loader.csv.CSV_StatementTemplate
 
CSV_StatementTemplate_Constraint - Class in slib.sglib.io.loader.csv
 
CSV_StatementTemplate_Constraint(StatementTemplateElement, StatementTemplate_Constraint_Type) - Constructor for class slib.sglib.io.loader.csv.CSV_StatementTemplate_Constraint
 

D

DATE - Static variable in class slib.sglib.io.loader.bio.gaf2.GraphLoader_GAF_2
 
DB - Static variable in class slib.sglib.io.loader.bio.gaf2.GraphLoader_GAF_2
 
DB_OBJECT_ID - Static variable in class slib.sglib.io.loader.bio.gaf2.GraphLoader_GAF_2
 
DB_OBJECT_NAME - Static variable in class slib.sglib.io.loader.bio.gaf2.GraphLoader_GAF_2
 
DB_OBJECT_SYMBOL - Static variable in class slib.sglib.io.loader.bio.gaf2.GraphLoader_GAF_2
 
DB_OBJECT_SYNONYM - Static variable in class slib.sglib.io.loader.bio.gaf2.GraphLoader_GAF_2
 
DB_OBJECT_TYPE - Static variable in class slib.sglib.io.loader.bio.gaf2.GraphLoader_GAF_2
 

E

endElement(String, String, String) - Method in class slib.sglib.io.loader.bio.mesh.MeshXMLHandler
 
endRDF() - Method in class slib.sglib.io.loader.rdf.SlibRdfHandler
 
EVIDENCE_CODE - Static variable in class slib.sglib.io.loader.bio.gaf2.GraphLoader_GAF_2
 
EvidenceCodeRules - Class in slib.sglib.io.loader.bio.gaf2
Evidence codes are not statements of the quality of the annotation.
EvidenceCodeRules() - Constructor for class slib.sglib.io.loader.bio.gaf2.EvidenceCodeRules
 
EXPchildren - Static variable in class slib.sglib.io.loader.bio.gaf2.EvidenceCodeRules
 

F

Filter - Class in slib.sglib.io.loader.utils.filter.graph
 
Filter(String, String) - Constructor for class slib.sglib.io.loader.utils.filter.graph.Filter
 
Filter(Conf) - Constructor for class slib.sglib.io.loader.utils.filter.graph.Filter
 
FilterCst - Class in slib.sglib.io.loader.utils.filter.graph
 
FilterCst() - Constructor for class slib.sglib.io.loader.utils.filter.graph.FilterCst
 
FilterGraph - Class in slib.sglib.io.loader.utils.filter.graph
 
FilterGraph(String, String) - Constructor for class slib.sglib.io.loader.utils.filter.graph.FilterGraph
 
FilterGraph(Conf) - Constructor for class slib.sglib.io.loader.utils.filter.graph.FilterGraph
 
FilterGraph_GAF2 - Class in slib.sglib.io.loader.utils.filter.graph.gaf2
 
FilterGraph_GAF2(String) - Constructor for class slib.sglib.io.loader.utils.filter.graph.gaf2.FilterGraph_GAF2
 
FilterGraph_GAF2(Conf) - Constructor for class slib.sglib.io.loader.utils.filter.graph.gaf2.FilterGraph_GAF2
 
FilterGraph_GAF2_cst - Class in slib.sglib.io.loader.utils.filter.graph.gaf2
 
FilterGraph_GAF2_cst() - Constructor for class slib.sglib.io.loader.utils.filter.graph.gaf2.FilterGraph_GAF2_cst
 
FilterGraph_Metrics - Class in slib.sglib.io.loader.utils.filter.graph.metrics
 
FilterGraph_Metrics(String) - Constructor for class slib.sglib.io.loader.utils.filter.graph.metrics.FilterGraph_Metrics
 
FilterGraph_Metrics(Conf) - Constructor for class slib.sglib.io.loader.utils.filter.graph.metrics.FilterGraph_Metrics
 
FilterGraph_Metrics_cst - Class in slib.sglib.io.loader.utils.filter.graph.metrics
 
FilterGraph_Metrics_cst() - Constructor for class slib.sglib.io.loader.utils.filter.graph.metrics.FilterGraph_Metrics_cst
 
FilterRepository - Class in slib.sglib.io.loader.utils.filter.graph.repo
 
filters - Variable in class slib.sglib.io.loader.utils.filter.graph.repo.FilterRepository
 
flush(G, String) - Method in class slib.sglib.io.loader.slibformat.GraphLoader_SLIB
 

G

GActionValidator - Class in slib.sglib.io.util
 
GActionValidator() - Constructor for class slib.sglib.io.util.GActionValidator
 
GDataConf - Class in slib.sglib.io.conf
 
GDataConf(GFormat) - Constructor for class slib.sglib.io.conf.GDataConf
 
GDataConf(GFormat, String) - Constructor for class slib.sglib.io.conf.GDataConf
 
GDataValidator - Class in slib.sglib.io.util
 
GDataValidator() - Constructor for class slib.sglib.io.util.GDataValidator
 
GENE_PRODUCT_ISOFORM - Static variable in class slib.sglib.io.loader.bio.gaf2.GraphLoader_GAF_2
 
getActions() - Method in class slib.sglib.io.conf.GraphConf
 
getData() - Method in class slib.sglib.io.conf.GraphConf
 
getDescriptorName() - Method in class slib.sglib.io.loader.bio.mesh.MeshConcept
 
getDescriptorUI() - Method in class slib.sglib.io.loader.bio.mesh.MeshConcept
 
getExcludedEC() - Method in class slib.sglib.io.loader.utils.filter.graph.gaf2.FilterGraph_GAF2
 
getFilter(String) - Method in class slib.sglib.io.loader.utils.filter.graph.repo.FilterRepository
 
getFilters() - Method in class slib.sglib.io.loader.utils.filter.graph.repo.FilterRepository
 
getFormat() - Method in class slib.sglib.io.conf.GDataConf
 
getId() - Method in class slib.sglib.io.loader.utils.filter.graph.Filter
 
getInstance() - Static method in class slib.sglib.io.loader.utils.filter.graph.repo.FilterRepository
 
getLoc() - Method in class slib.sglib.io.conf.GDataConf
 
getMetric() - Method in class slib.sglib.io.loader.utils.filter.graph.metrics.FilterGraph_Metrics
 
getRelationships() - Method in class slib.sglib.io.loader.bio.obo.utils.OboTerm
 
getSupportedFormat() - Static method in class slib.sglib.io.loader.GraphLoaderGeneric
Access to the set of supported format.
getTargetUriString() - Method in class slib.sglib.io.loader.bio.obo.utils.OboRelationship
 
getTaxons() - Method in class slib.sglib.io.loader.utils.filter.graph.gaf2.FilterGraph_GAF2
 
getType() - Method in class slib.sglib.io.loader.utils.filter.graph.Filter
 
getTypeUriString() - Method in class slib.sglib.io.loader.bio.obo.utils.OboRelationship
 
getUri() - Method in class slib.sglib.io.conf.GraphConf
 
getURIstring() - Method in class slib.sglib.io.loader.bio.obo.utils.OboTerm
 
getURIstring() - Method in class slib.sglib.io.loader.bio.obo.utils.OboType
 
getValue() - Method in class slib.sglib.io.loader.utils.filter.graph.metrics.FilterGraph_Metrics
 
GFormat - Enum in slib.sglib.io.util
 
GOID - Static variable in class slib.sglib.io.loader.bio.gaf2.GraphLoader_GAF_2
 
GraphConf - Class in slib.sglib.io.conf
 
GraphConf() - Constructor for class slib.sglib.io.conf.GraphConf
 
GraphConf(URI) - Constructor for class slib.sglib.io.conf.GraphConf
 
GraphLoader - Interface in slib.sglib.io.loader
Generic interface defining the methods a graph loader must implements
GraphLoader_CSV - Class in slib.sglib.io.loader.csv
 
GraphLoader_CSV() - Constructor for class slib.sglib.io.loader.csv.GraphLoader_CSV
 
GraphLoader_GAF_2 - Class in slib.sglib.io.loader.bio.gaf2
GAF 2 parser used to construct a graph from a GAF 2.0 annotation file The parser consider considering GAF 2.0 specification provided at http://wiki.geneontology.org/index.php/GO_Consortium_web_GAF2.0_documentation http://www.geneontology.org/GO.format.gaf-2_0.shtml TODO - Manage multiple organism specification : taxon:1|taxon:1000
GraphLoader_GAF_2() - Constructor for class slib.sglib.io.loader.bio.gaf2.GraphLoader_GAF_2
 
GraphLoader_MESH_XML - Class in slib.sglib.io.loader.bio.mesh
MeSH Loader.
GraphLoader_MESH_XML() - Constructor for class slib.sglib.io.loader.bio.mesh.GraphLoader_MESH_XML
 
GraphLoader_OBO_1_2 - Class in slib.sglib.io.loader.bio.obo
OBO specification
Compatibility with other format-version than 1.2 is not supported.
GraphLoader_OBO_1_2() - Constructor for class slib.sglib.io.loader.bio.obo.GraphLoader_OBO_1_2
 
GraphLoader_SLIB - Class in slib.sglib.io.loader.slibformat
TODO Comment DO not Support transitivity and inverse definitions anymore
GraphLoader_SLIB() - Constructor for class slib.sglib.io.loader.slibformat.GraphLoader_SLIB
 
GraphLoader_TSVannot - Class in slib.sglib.io.loader.annot
Class used to load annotation file: XXXX1[TAB]c1;c2;c3 XXXX2[TAB]c2;c3 ...
GraphLoader_TSVannot() - Constructor for class slib.sglib.io.loader.annot.GraphLoader_TSVannot
 
GraphLoader_Wordnet - Class in slib.sglib.io.loader.wordnet
 
GraphLoader_Wordnet() - Constructor for class slib.sglib.io.loader.wordnet.GraphLoader_Wordnet
 
GraphLoaderGeneric - Class in slib.sglib.io.loader
Graph Loader is a class used to facilitate graph loading.
GraphLoaderGeneric() - Constructor for class slib.sglib.io.loader.GraphLoaderGeneric
 
GraphLoaderSnomedCT_RF2 - Class in slib.sglib.io.loader.bio.snomedct
 
GraphLoaderSnomedCT_RF2() - Constructor for class slib.sglib.io.loader.bio.snomedct.GraphLoaderSnomedCT_RF2
 
GraphPlotter_Graphviz - Class in slib.sglib.io.plotter
Class used to plot graph using Graphviz.
GraphPlotter_Graphviz() - Constructor for class slib.sglib.io.plotter.GraphPlotter_Graphviz
 

H

handleComment(String) - Method in class slib.sglib.io.loader.rdf.SlibRdfHandler
 
handleNamespace(String, String) - Method in class slib.sglib.io.loader.rdf.SlibRdfHandler
 
handleStatement(Statement) - Method in class slib.sglib.io.loader.rdf.SlibRdfHandler
 

I

ID_SUBCLASSOF_SNOMED - Static variable in class slib.sglib.io.loader.bio.snomedct.GraphLoaderSnomedCT_RF2
 
idMapping - Static variable in class slib.sglib.io.loader.bio.snomedct.GraphLoaderSnomedCT_RF2
 
isAllow_all_gafVersion() - Method in class slib.sglib.io.loader.bio.obo.GraphLoader_OBO_1_2
 
isObsolete() - Method in class slib.sglib.io.loader.bio.obo.utils.OboTerm
 
isObsolete() - Method in class slib.sglib.io.loader.bio.obo.utils.OboType
 
isRemoveEmpty() - Method in class slib.sglib.io.loader.utils.filter.graph.metrics.FilterGraph_Metrics
 
ISSchildren - Static variable in class slib.sglib.io.loader.bio.gaf2.EvidenceCodeRules
 
isSymmetric() - Method in class slib.sglib.io.loader.bio.obo.utils.OboType
 
isTransitive() - Method in class slib.sglib.io.loader.bio.obo.utils.OboType
 
isValid() - Method in class slib.sglib.io.conf.GDataConf
 
isValid() - Method in class slib.sglib.io.conf.GraphConf
 

L

load(GraphConf) - Static method in class slib.sglib.io.loader.GraphLoaderGeneric
Build the graph considering the given configuration.
load(GraphConf, G) - Static method in class slib.sglib.io.loader.GraphLoaderGeneric
Impact the given graph considering the given configuration.
load(Collection<GraphConf>) - Static method in class slib.sglib.io.loader.GraphLoaderGeneric
Load the collection of configurations.
load(G, String) - Method in class slib.sglib.io.loader.rdf.RDFLoader
 
load(G, InputStream) - Method in class slib.sglib.io.loader.rdf.RDFLoader
 
load(G, String, RDFFormat) - Method in class slib.sglib.io.loader.rdf.RDFLoader
 
load(G, Map<String, RDFFormat>) - Method in class slib.sglib.io.loader.rdf.RDFLoader
 
loadTSV(String) - Method in class slib.sglib.io.loader.annot.GraphLoader_TSVannot
 
logger - Static variable in class slib.sglib.io.loader.GraphLoaderGeneric
 

M

main(String[]) - Static method in class slib.sglib.io.loader.bio.mesh.GraphLoader_MESH_XML
 
MeshConcept - Class in slib.sglib.io.loader.bio.mesh
Dummy representation of a Mesh Concept
MeshConcept() - Constructor for class slib.sglib.io.loader.bio.mesh.MeshConcept
 
MeshXMLHandler - Class in slib.sglib.io.loader.bio.mesh
 
MeshXMLHandler(GraphLoader_MESH_XML) - Constructor for class slib.sglib.io.loader.bio.mesh.MeshXMLHandler
Create a XML handler for MeSH.
METRIC - Static variable in class slib.sglib.io.loader.utils.filter.graph.metrics.FilterGraph_Metrics_cst
 

O

OboRelationship - Class in slib.sglib.io.loader.bio.obo.utils
 
OboRelationship() - Constructor for class slib.sglib.io.loader.bio.obo.utils.OboRelationship
 
OboRelationship(String, String) - Constructor for class slib.sglib.io.loader.bio.obo.utils.OboRelationship
 
OboTerm - Class in slib.sglib.io.loader.bio.obo.utils
 
OboTerm(String) - Constructor for class slib.sglib.io.loader.bio.obo.utils.OboTerm
 
OboTerm() - Constructor for class slib.sglib.io.loader.bio.obo.utils.OboTerm
 
OboType - Class in slib.sglib.io.loader.bio.obo.utils
 
OboType() - Constructor for class slib.sglib.io.loader.bio.obo.utils.OboType
 
OboType(String) - Constructor for class slib.sglib.io.loader.bio.obo.utils.OboType
 
onElement - Variable in class slib.sglib.io.loader.csv.CSV_StatementTemplate_Constraint
 

P

PARAM_HEADER - Static variable in class slib.sglib.io.loader.annot.GraphLoader_TSVannot
 
PARAM_PREDICATE - Static variable in class slib.sglib.io.loader.annot.GraphLoader_TSVannot
 
PARAM_PREFIX_OBJECT - Static variable in class slib.sglib.io.loader.annot.GraphLoader_TSVannot
 
PARAM_PREFIX_SUBJECT - Static variable in class slib.sglib.io.loader.annot.GraphLoader_TSVannot
 
plot(URIFactory, G, Set<URI>, boolean) - Static method in class slib.sglib.io.plotter.GraphPlotter_Graphviz
 
plot(URIFactory, G, Set<URI>, boolean, boolean, IndexHash) - Static method in class slib.sglib.io.plotter.GraphPlotter_Graphviz
 
populate(GDataConf, G) - Method in class slib.sglib.io.loader.annot.GraphLoader_TSVannot
 
populate(GDataConf, G) - Method in class slib.sglib.io.loader.bio.gaf2.GraphLoader_GAF_2
Method used to load an annotation repository considering a specific configuration and a potential mapping restriction i.e.
populate(GDataConf, G) - Method in class slib.sglib.io.loader.bio.mesh.GraphLoader_MESH_XML
 
populate(GDataConf, G) - Method in class slib.sglib.io.loader.bio.obo.GraphLoader_OBO_1_2
 
populate(GDataConf, G) - Method in class slib.sglib.io.loader.bio.snomedct.GraphLoaderSnomedCT_RF2
 
populate(GDataConf, G) - Method in class slib.sglib.io.loader.csv.GraphLoader_CSV
 
populate(GDataConf, G) - Method in interface slib.sglib.io.loader.GraphLoader
Populate an existing graph considering the given configuration
populate(GDataConf, G) - Static method in class slib.sglib.io.loader.GraphLoaderGeneric
Populate a given graph considering a configuration.
populate(GDataConf, G) - Method in class slib.sglib.io.loader.rdf.RDFLoader
 
populate(GDataConf, G) - Method in class slib.sglib.io.loader.slibformat.GraphLoader_SLIB
 
populate(GDataConf, G) - Method in class slib.sglib.io.loader.wordnet.GraphLoader_Wordnet
 
process(GDataConf, G) - Method in class slib.sglib.io.loader.slibformat.GraphLoader_SLIB
 

Q

QUALIFIER - Static variable in class slib.sglib.io.loader.bio.gaf2.GraphLoader_GAF_2
 

R

RDFLoader - Class in slib.sglib.io.loader.rdf
 
RDFLoader() - Constructor for class slib.sglib.io.loader.rdf.RDFLoader
 
RDFLoader(RDFFormat) - Constructor for class slib.sglib.io.loader.rdf.RDFLoader
 
REFERENCE - Static variable in class slib.sglib.io.loader.bio.gaf2.GraphLoader_GAF_2
 
REMOVE_EC - Static variable in class slib.sglib.io.loader.utils.filter.graph.gaf2.FilterGraph_GAF2_cst
 
REMOVE_EMPTY - Static variable in class slib.sglib.io.loader.utils.filter.graph.metrics.FilterGraph_Metrics_cst
 

S

setActions(List<GAction>) - Method in class slib.sglib.io.conf.GraphConf
 
setAllow_all_gafVersion(boolean) - Method in class slib.sglib.io.loader.bio.obo.GraphLoader_OBO_1_2
 
setData(List<GDataConf>) - Method in class slib.sglib.io.conf.GraphConf
 
setDescriptorName(String) - Method in class slib.sglib.io.loader.bio.mesh.MeshConcept
 
setDescriptorUI(String) - Method in class slib.sglib.io.loader.bio.mesh.MeshConcept
 
setFormat(GFormat) - Method in class slib.sglib.io.conf.GDataConf
 
setId(String) - Method in class slib.sglib.io.loader.utils.filter.graph.Filter
 
setLoc(String) - Method in class slib.sglib.io.conf.GDataConf
 
setMetric(String) - Method in class slib.sglib.io.loader.utils.filter.graph.metrics.FilterGraph_Metrics
 
setObsolete(boolean) - Method in class slib.sglib.io.loader.bio.obo.utils.OboTerm
 
setObsolete(boolean) - Method in class slib.sglib.io.loader.bio.obo.utils.OboType
 
setRelationships(ArrayList<OboRelationship>) - Method in class slib.sglib.io.loader.bio.obo.utils.OboTerm
 
setRemoveEmpty(boolean) - Method in class slib.sglib.io.loader.utils.filter.graph.metrics.FilterGraph_Metrics
 
setSymmetricity(boolean) - Method in class slib.sglib.io.loader.bio.obo.utils.OboType
 
setTargetUriString(String) - Method in class slib.sglib.io.loader.bio.obo.utils.OboRelationship
 
setTransitivity(boolean) - Method in class slib.sglib.io.loader.bio.obo.utils.OboType
 
setType(String) - Method in class slib.sglib.io.loader.utils.filter.graph.Filter
 
setTypeUriString(String) - Method in class slib.sglib.io.loader.bio.obo.utils.OboRelationship
 
setUri(URI) - Method in class slib.sglib.io.conf.GraphConf
 
setURIstring(String) - Method in class slib.sglib.io.loader.bio.obo.utils.OboTerm
 
setURIstring(String) - Method in class slib.sglib.io.loader.bio.obo.utils.OboType
 
setValue(double) - Method in class slib.sglib.io.loader.utils.filter.graph.metrics.FilterGraph_Metrics
 
slib.sglib.io.conf - package slib.sglib.io.conf
 
slib.sglib.io.loader - package slib.sglib.io.loader
 
slib.sglib.io.loader.annot - package slib.sglib.io.loader.annot
 
slib.sglib.io.loader.bio.gaf2 - package slib.sglib.io.loader.bio.gaf2
 
slib.sglib.io.loader.bio.mesh - package slib.sglib.io.loader.bio.mesh
 
slib.sglib.io.loader.bio.obo - package slib.sglib.io.loader.bio.obo
 
slib.sglib.io.loader.bio.obo.utils - package slib.sglib.io.loader.bio.obo.utils
 
slib.sglib.io.loader.bio.snomedct - package slib.sglib.io.loader.bio.snomedct
 
slib.sglib.io.loader.csv - package slib.sglib.io.loader.csv
 
slib.sglib.io.loader.rdf - package slib.sglib.io.loader.rdf
 
slib.sglib.io.loader.slibformat - package slib.sglib.io.loader.slibformat
 
slib.sglib.io.loader.utils.filter.graph - package slib.sglib.io.loader.utils.filter.graph
 
slib.sglib.io.loader.utils.filter.graph.gaf2 - package slib.sglib.io.loader.utils.filter.graph.gaf2
 
slib.sglib.io.loader.utils.filter.graph.metrics - package slib.sglib.io.loader.utils.filter.graph.metrics
 
slib.sglib.io.loader.utils.filter.graph.repo - package slib.sglib.io.loader.utils.filter.graph.repo
 
slib.sglib.io.loader.wordnet - package slib.sglib.io.loader.wordnet
 
slib.sglib.io.plotter - package slib.sglib.io.plotter
 
slib.sglib.io.util - package slib.sglib.io.util
 
SlibRdfHandler - Class in slib.sglib.io.loader.rdf
 
SlibRdfHandler(G) - Constructor for class slib.sglib.io.loader.rdf.SlibRdfHandler
 
splitString(String, int) - Static method in class slib.sglib.io.plotter.GraphPlotter_Graphviz
 
startElement(String, String, String, Attributes) - Method in class slib.sglib.io.loader.bio.mesh.MeshXMLHandler
 
startRDF() - Method in class slib.sglib.io.loader.rdf.SlibRdfHandler
 
StatementTemplate_Constraint_Type - Enum in slib.sglib.io.loader.csv
 
StatementTemplateElement - Enum in slib.sglib.io.loader.csv
 
supportedFormat - Static variable in class slib.sglib.io.loader.GraphLoaderGeneric
The formats currently supported by the generic loader.
supportedTypes - Static variable in class slib.sglib.io.loader.utils.filter.graph.FilterCst
 
supportFormat(String) - Static method in class slib.sglib.io.loader.GraphLoaderGeneric
Check if the generic loader support the given format.

T

TAXON - Static variable in class slib.sglib.io.loader.bio.gaf2.GraphLoader_GAF_2
 
TAXONS_IDS - Static variable in class slib.sglib.io.loader.utils.filter.graph.gaf2.FilterGraph_GAF2_cst
 
toString() - Method in class slib.sglib.io.loader.bio.mesh.MeshConcept
 
toString() - Method in class slib.sglib.io.loader.utils.filter.graph.Filter
 
toString() - Method in class slib.sglib.io.loader.utils.filter.graph.gaf2.FilterGraph_GAF2
 
toString() - Method in class slib.sglib.io.loader.utils.filter.graph.metrics.FilterGraph_Metrics
 
type - Variable in class slib.sglib.io.loader.csv.CSV_StatementTemplate_Constraint
 
TYPE - Static variable in class slib.sglib.io.loader.utils.filter.graph.gaf2.FilterGraph_GAF2_cst
 
TYPE - Static variable in class slib.sglib.io.loader.utils.filter.graph.metrics.FilterGraph_Metrics_cst
 

V

valid(GAction) - Static method in class slib.sglib.io.util.GActionValidator
 
valid(GDataConf) - Static method in class slib.sglib.io.util.GDataValidator
 
VALUE - Static variable in class slib.sglib.io.loader.utils.filter.graph.metrics.FilterGraph_Metrics_cst
 
valueOf(String) - Static method in enum slib.sglib.io.loader.csv.StatementTemplate_Constraint_Type
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum slib.sglib.io.loader.csv.StatementTemplateElement
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum slib.sglib.io.util.GFormat
Returns the enum constant of this type with the specified name.
values() - Static method in enum slib.sglib.io.loader.csv.StatementTemplate_Constraint_Type
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum slib.sglib.io.loader.csv.StatementTemplateElement
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum slib.sglib.io.util.GFormat
Returns an array containing the constants of this enum type, in the order they are declared.

W

WITH - Static variable in class slib.sglib.io.loader.bio.gaf2.GraphLoader_GAF_2
 
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