- gamma - Variable in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_IC_Prop_Tversky_Contrast_Model
-
- gamma - Variable in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_IC_Tversky_Contrast_Model
-
- gamma_param_name - Static variable in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_IC_Prop_Tversky_Contrast_Model
-
- gamma_param_name - Static variable in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_IC_Tversky_Contrast_Model
-
- getAllAncestorsInc() - Method in class slib.sml.sm.core.engine.SM_Engine
-
Access to the inclusive ancestors for all classes.
- getAllDescendantsInc() - Method in class slib.sml.sm.core.engine.SM_Engine
-
Access to a view of the inclusive descendants for all classes.
- getAllNbAncestorsInc() - Method in class slib.sml.sm.core.engine.SM_Engine
-
Inclusive process
- getAllNbDescendantsInc() - Method in class slib.sml.sm.core.engine.SM_Engine
-
Compute the number of inclusive descendants for all classes
- getAllNbReachableLeaves() - Method in class slib.sml.sm.core.engine.SM_Engine
-
Compute for each class x the number classes which are leaves which are
subsumed by x.
- getAllShortestPath(URI, GWS) - Method in class slib.sml.sm.core.engine.SM_Engine
-
CACHED
- getAncestorEngine() - Method in class slib.sml.sm.core.engine.SM_Engine
-
- getAncestorsInc(Set<URI>) - Method in class slib.sml.sm.core.engine.SM_Engine
-
Compute the union of the inclusive ancestors of a set of classes.
- getAncestorsInc(URI) - Method in class slib.sml.sm.core.engine.SM_Engine
-
Give access to a view of the inclusive ancestors of a class.
- getBATCH_LIMIT() - Method in class slib.sml.smutils.SQLiteUtils
-
- getBATCH_LIMIT_MATRIX_LINE() - Method in class slib.sml.smutils.SQLiteUtils
-
- getClasses() - Method in class slib.sml.sm.core.engine.SM_Engine
-
Access to the set of URI of the graph considered as classes.
- getClassName() - Method in class slib.sml.sm.core.metrics.ic.utils.ICconf
-
Getter of the class name.
- getClassName() - Method in class slib.sml.sm.core.utils.SMconf
-
- getDescendantEngine() - Method in class slib.sml.sm.core.engine.SM_Engine
-
- getDescendantsInc(URI) - Method in class slib.sml.sm.core.engine.SM_Engine
-
Give access to a view of the inclusive descendants of a class.
- getFlag() - Method in class slib.sml.sm.core.metrics.ic.utils.ICconf
-
Getter of the flag.
- getFlag() - Method in class slib.sml.sm.core.utils.SMconf
-
- getGraph() - Method in class slib.sml.sm.core.engine.SM_Engine
-
Access to the graph associated to the engine.
- getHypoAncEx(URI, URI) - Method in class slib.sml.sm.core.engine.SM_Engine
-
NOT_CACHED
- getIC(ICconf, URI) - Method in class slib.sml.sm.core.engine.SM_Engine
-
Get the Information Content of a class.
- getIC_MICA(ICconf, URI, URI) - Method in class slib.sml.sm.core.engine.SM_Engine
-
Get the information content of the most informative common ancestor
(MICA) of two classes.
- getIC_results(ICconf) - Method in class slib.sml.sm.core.engine.SM_Engine
-
Access to a view of the information content of all classes.
- getICconf() - Method in class slib.sml.sm.core.utils.SMconf
-
The IC configuration associated to the configuration.
- getIcConf() - Method in class slib.sml.sm.core.utils.SMconf
-
- getId() - Method in class slib.sml.sm.core.metrics.ic.utils.ICconf
-
Getter of the id.
- getId() - Method in class slib.sml.sm.core.utils.SMconf
-
- getInfo(String) - Method in class slib.sml.smutils.SQLiteUtils
-
Return info a specified database
- getInfo(String, String) - Method in class slib.sml.smutils.SQLiteUtils
-
Return info a specified table
- getInstances() - Method in class slib.sml.sm.core.engine.SM_Engine
-
Access to the set of URI of the graph considered as instances.
- getK() - Method in class slib.sml.sm.core.measures.graph.framework.dag.Sim_Framework_DAG_Set_Knappe_2004
-
- getK() - Method in class slib.sml.sm.core.measures.graph.framework.dag.Sim_Framework_DAG_Set_Tversky_1977
-
- getLabel() - Method in class slib.sml.sm.core.metrics.ic.utils.ICconf
-
Getter of the label.
- getLabel() - Method in class slib.sml.sm.core.utils.SMconf
-
- getLCAs(URI, URI) - Method in class slib.sml.sm.core.engine.SM_Engine
-
- getLCAs(URI, URI) - Method in interface slib.sml.sm.core.utils.LCAFinder
-
Compute the set of Disjoint Common Ancestors of a pair of concepts The
processed graph do not require to be transitively reduced.
- getLCAs(URI, URI) - Method in class slib.sml.sm.core.utils.LCAFinderImpl
-
- getLine(boolean, Long) - Method in class slib.sml.smutils.ResultsMerger
-
- getLogBase() - Method in class slib.sml.sm.core.metrics.utils.LogBasedMetric
-
- getLogBase() - Method in interface slib.sml.sm.core.metrics.utils.LogBasedMetricInterface
-
Getter of the log base associated to the metric.
- getMatrixScore(Set<URI>, Set<URI>, SMconf) - Method in class slib.sml.sm.core.engine.SM_Engine
-
Compute the matrix of similarity for two sets of vertex/concepts/classes.
- getMaxDepth() - Method in class slib.sml.sm.core.engine.SM_Engine
-
Access to the maximal depth of a class in the underlying taxonomic graph.
- getMaxDepths() - Method in class slib.sml.sm.core.engine.SM_Engine
-
Give access to a view of the maximal depth of all classes.
- getMICA(ICconf, URI, URI) - Method in class slib.sml.sm.core.engine.SM_Engine
-
Get the most informative common ancestor (MICA) of two classes.
- getMinDepths() - Method in class slib.sml.sm.core.engine.SM_Engine
-
Give access to a view of the minimal depth of all classes.
- getMinStrictPositiveDouble(Map<X, Double>) - Static method in class slib.sml.sm.core.utils.SMutils
-
Return the minimal positive value amon the values of the map (0 excluded)
- getMSA(URI, URI, GWS) - Method in class slib.sml.sm.core.engine.SM_Engine
-
NOT_CACHED
- getMSA_pekar_staab(URI, Map<URI, Double>, Map<URI, Double>, Set<URI>, Set<URI>, Dijkstra) - Static method in class slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.utils.SimDagEdgeUtils
-
Compute the most specific ancestor considering Pekar and Staab 2002
formula to minimize i.e.
- getNbInstancesInferredPropFromCorpus(boolean) - Method in class slib.sml.sm.core.engine.SM_Engine
-
Computes the number of instances which is associated to all the classes
which are defined in the graph (with inferences).
- getNbOccurrenceProp() - Method in class slib.sml.sm.core.engine.SM_Engine
-
Topological propagation considering one occurrence per term
- getnbPathLeadingToAllVertex() - Method in class slib.sml.sm.core.engine.SM_Engine
-
- getP_MICA(ICconf, URI, URI) - Method in class slib.sml.sm.core.engine.SM_Engine
-
- getPairwiseApproach(String) - Static method in class slib.sml.sm.core.utils.SMConstants
-
Return the id of the approach associated to the semantic measure flag
- getParents(URI) - Method in class slib.sml.sm.core.engine.SM_Engine
-
Get the parents of a class, that is to say its direct ancestors.
- getReachableLeaves() - Method in class slib.sml.sm.core.engine.SM_Engine
-
Compute for each class x the classes which are leaves which are subsumed
by x.
- getReachableLeaves(URI) - Method in class slib.sml.sm.core.engine.SM_Engine
-
Compute for each class x the classes which are leaves which are subsumed
by x.
- getRoot() - Method in class slib.sml.sm.core.engine.SM_Engine
-
Get the root of the taxonomic graph contained in the graph associated to
the engine.
- getShortestPath(URI, URI, GWS) - Method in class slib.sml.sm.core.engine.SM_Engine
-
CACHED ! Be careful modification of RelTypes requires cache clearing
- getTaxonomicLeaves() - Method in class slib.sml.sm.core.engine.SM_Engine
-
Access to a view of the set of leaves of the underlying taxonomic graph.
- getVector(Set<URI>, SMconf) - Method in class slib.sml.sm.core.engine.SM_Engine
-
- getWeightingScheme(String) - Method in class slib.sml.sm.core.engine.SM_Engine
-
TODO store the weighting scheme in a Map Provide a way to
load edge weight from file or to compute them using specific methods
- GROUPWISE_MEASURE_FLAGS - Static variable in class slib.sml.sm.core.utils.SMConstants
-
- groupwiseClassName(String) - Static method in class slib.sml.sm.core.utils.SMConstants
-
Return the class Name of the given groupwise semantic measure flag
- groupwiseMeasureMapping - Static variable in class slib.sml.sm.core.utils.SMConstants
-
- IC - Interface in slib.sml.sm.core.metrics.ic
-
Interface defining the methods representing an IC computer.
- ic - Variable in class slib.sml.sm.core.utils.OperatorConf
-
the IC configuration associated to the operator configuration.
- IC_annot_resnik_1995 - Class in slib.sml.sm.core.metrics.ic.annot
-
Implementation of the original definition of Information Content (IC)
proposed by Resnik.
- IC_annot_resnik_1995() - Constructor for class slib.sml.sm.core.metrics.ic.annot.IC_annot_resnik_1995
-
- IC_ANNOT_RESNIK_1995 - Static variable in class slib.sml.sm.core.utils.SMConstants
-
- IC_annot_resnik_1995_Normalized - Class in slib.sml.sm.core.metrics.ic.annot
-
ICi_resnik_1995
TODO Add resnik citation
p(c) defined as number of top down fashion path leading to c from the
reachable leaves from c + 1 max_pc = max p(c) for all concepts.
- IC_annot_resnik_1995_Normalized() - Constructor for class slib.sml.sm.core.metrics.ic.annot.IC_annot_resnik_1995_Normalized
-
- IC_ANNOT_RESNIK_1995_NORMALIZED - Static variable in class slib.sml.sm.core.utils.SMConstants
-
- IC_Conf_Corpus - Class in slib.sml.sm.core.metrics.ic.utils
-
Class used to represent configurations dedicated to Corpus-based IC.
- IC_Conf_Corpus(String) - Constructor for class slib.sml.sm.core.metrics.ic.utils.IC_Conf_Corpus
-
Build an instance of IC configuration.
- IC_Conf_Corpus(String, String) - Constructor for class slib.sml.sm.core.metrics.ic.utils.IC_Conf_Corpus
-
Build an instance of IC configuration.
- IC_Conf_Corpus(String, String, String) - Constructor for class slib.sml.sm.core.metrics.ic.utils.IC_Conf_Corpus
-
Build an instance of the configuration considering the given parameters.
- IC_Conf_Topo - Class in slib.sml.sm.core.metrics.ic.utils
-
- IC_Conf_Topo(String, String, String) - Constructor for class slib.sml.sm.core.metrics.ic.utils.IC_Conf_Topo
-
- IC_Conf_Topo(String) - Constructor for class slib.sml.sm.core.metrics.ic.utils.IC_Conf_Topo
-
- IC_Conf_Topo(String, String) - Constructor for class slib.sml.sm.core.metrics.ic.utils.IC_Conf_Topo
-
Build an instance of IC configuration.
- IC_FLAGS - Static variable in class slib.sml.sm.core.utils.SMConstants
-
- IC_PROB - Static variable in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_Constants
-
- IC_PROB_OCCURENCE_PROPAGATED - Static variable in class slib.sml.sm.core.utils.SMConstants
-
- IC_probOccurence_propagatted - Class in slib.sml.sm.core.metrics.ic.annot
-
- IC_probOccurence_propagatted() - Constructor for class slib.sml.sm.core.metrics.ic.annot.IC_probOccurence_propagatted
-
- IC_SHORT_FLAG - Static variable in class slib.sml.sm.core.utils.SMConstants
-
- ICconf - Class in slib.sml.sm.core.metrics.ic.utils
-
- ICconf(String) - Constructor for class slib.sml.sm.core.metrics.ic.utils.ICconf
-
Builder of the IC configuration.
- ICconf(String, String, String) - Constructor for class slib.sml.sm.core.metrics.ic.utils.ICconf
-
Advanced builder of an instance of IC configuration.
- ICcorpus - Interface in slib.sml.sm.core.metrics.ic.annot
-
- ICi_ancestors_norm - Class in slib.sml.sm.core.metrics.ic.topo
-
Basic definition of an estimator of specificity based on the number of ancestors.
- ICi_ancestors_norm() - Constructor for class slib.sml.sm.core.metrics.ic.topo.ICi_ancestors_norm
-
- ICI_ANCESTORS_NORM - Static variable in class slib.sml.sm.core.utils.SMConstants
-
- ICi_depth_max_linear - Class in slib.sml.sm.core.metrics.ic.topo
-
- ICi_depth_max_linear() - Constructor for class slib.sml.sm.core.metrics.ic.topo.ICi_depth_max_linear
-
- ICI_DEPTH_MAX_LINEAR - Static variable in class slib.sml.sm.core.utils.SMConstants
-
- ICi_depth_max_nonlinear - Class in slib.sml.sm.core.metrics.ic.topo
-
- ICi_depth_max_nonlinear() - Constructor for class slib.sml.sm.core.metrics.ic.topo.ICi_depth_max_nonlinear
-
- ICI_DEPTH_MAX_NONLINEAR - Static variable in class slib.sml.sm.core.utils.SMConstants
-
- ICi_depth_min_nonlinear - Class in slib.sml.sm.core.metrics.ic.topo
-
- ICi_depth_min_nonlinear() - Constructor for class slib.sml.sm.core.metrics.ic.topo.ICi_depth_min_nonlinear
-
- ICI_DEPTH_MIN_NONLINEAR - Static variable in class slib.sml.sm.core.utils.SMConstants
-
- ICi_harispe_2012 - Class in slib.sml.sm.core.metrics.ic.topo
-
Modification of Sanchez et al.
- ICi_harispe_2012() - Constructor for class slib.sml.sm.core.metrics.ic.topo.ICi_harispe_2012
-
- ICI_HARISPE_2012 - Static variable in class slib.sml.sm.core.utils.SMConstants
-
- ICI_PROB_OCCURENCE - Static variable in class slib.sml.sm.core.utils.SMConstants
-
- ICI_PROB_OCCURENCE_PROPAGATED - Static variable in class slib.sml.sm.core.utils.SMConstants
-
- ICi_probOccurence - Class in slib.sml.sm.core.metrics.ic.topo
-
ICi_resnik_1995
TODO Add resnik citation
p(c) defined as number of top down fashion path leading to c from the
reachable leaves from c + 1 max_pc = max p(c) for all concepts.
- ICi_probOccurence() - Constructor for class slib.sml.sm.core.metrics.ic.topo.ICi_probOccurence
-
- ICi_probOccurence_propagatted - Class in slib.sml.sm.core.metrics.ic.topo
-
ICi_resnik_1995
TODO Add resnik citation
p(c) defined as number of top down fashion path leading to c from the
reachable leaves from c + 1 max_pc = max p(c) for all concepts.
- ICi_probOccurence_propagatted() - Constructor for class slib.sml.sm.core.metrics.ic.topo.ICi_probOccurence_propagatted
-
- ICi_resnik_1995 - Class in slib.sml.sm.core.metrics.ic.topo
-
ICi_resnik_1995
TODO Add resnik citation
p(c) defined as number of top down fashion path leading to c from the
reachable leaves from c + 1 max_pc = max p(c) for all concepts.
- ICi_resnik_1995() - Constructor for class slib.sml.sm.core.metrics.ic.topo.ICi_resnik_1995
-
- ICI_RESNIK_1995 - Static variable in class slib.sml.sm.core.utils.SMConstants
-
- ICI_RESNIK_UNPROPAGATED_1995 - Static variable in class slib.sml.sm.core.utils.SMConstants
-
- ICi_resnik_unpropagatted_1995 - Class in slib.sml.sm.core.metrics.ic.topo
-
ICi_resnik_1995
TODO Add resnik citation
p(c) defined as number of top down fashion path leading to c from the
reachable leaves from c + 1 max_pc = max p(c) for all concepts.
- ICi_resnik_unpropagatted_1995() - Constructor for class slib.sml.sm.core.metrics.ic.topo.ICi_resnik_unpropagatted_1995
-
- ICi_sanchez_2011 - Class in slib.sml.sm.core.metrics.ic.topo
-
Reference: Sanchez D, Batet M, Isern D: Ontology-based information content
computation.
- ICi_sanchez_2011() - Constructor for class slib.sml.sm.core.metrics.ic.topo.ICi_sanchez_2011
-
- ICI_SANCHEZ_2011 - Static variable in class slib.sml.sm.core.utils.SMConstants
-
- ICi_sanchez_2011_b_adapted - Class in slib.sml.sm.core.metrics.ic.topo
-
Reference: Sanchez D, Batet M, Isern D: Ontology-based information content
computation.
- ICi_sanchez_2011_b_adapted() - Constructor for class slib.sml.sm.core.metrics.ic.topo.ICi_sanchez_2011_b_adapted
-
- ICI_SANCHEZ_2011_b_adapted - Static variable in class slib.sml.sm.core.utils.SMConstants
-
- ICi_seco_2004 - Class in slib.sml.sm.core.metrics.ic.topo
-
Seco N, Veale T, Hayes J: An Intrinsic Information Content Metric for
Semantic Similarity in WordNet.
- ICi_seco_2004() - Constructor for class slib.sml.sm.core.metrics.ic.topo.ICi_seco_2004
-
- ICI_SECO_2004 - Static variable in class slib.sml.sm.core.utils.SMConstants
-
- ICi_zhou_2008 - Class in slib.sml.sm.core.metrics.ic.topo
-
Zhou Z, Wang Y, Gu J: A New Model of Information Content for Semantic
Similarity in WordNet.
- ICi_zhou_2008() - Constructor for class slib.sml.sm.core.metrics.ic.topo.ICi_zhou_2008
-
Builder of an instance of IC computer.
- ICi_zhou_2008(double) - Constructor for class slib.sml.sm.core.metrics.ic.topo.ICi_zhou_2008
-
Builder of an instance of IC computer.
- ICI_ZHOU_2008 - Static variable in class slib.sml.sm.core.utils.SMConstants
-
- icsMapping - Static variable in class slib.sml.sm.core.utils.SMConstants
-
- ICtopo - Interface in slib.sml.sm.core.metrics.ic.topo
-
Class representing Topological Information Content
- IcUtils - Class in slib.sml.sm.core.metrics.ic.utils
-
Class used to defined static methods utility.
- IcUtils() - Constructor for class slib.sml.sm.core.metrics.ic.utils.IcUtils
-
- id - Variable in class slib.sml.sm.core.utils.OperatorConf
-
the unique id identifying the configuration.
- IS_SYMMETRIC - Static variable in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_Lin_1998
-
- isCachePairwiseResults() - Method in class slib.sml.sm.core.engine.SM_Engine
-
Check if the engine is configured to store the results of the pairwise
semantic measure computation.
- isCorpusBased() - Method in class slib.sml.sm.core.metrics.ic.utils.ICconf
-
- isSymmetric() - Method in class slib.sml.sm.core.measures.graph.framework.dag.Sim_Framework_DAG_Set_Bader_2003
-
- isSymmetric() - Method in class slib.sml.sm.core.measures.graph.framework.dag.Sim_Framework_DAG_Set_Batet_2010
-
- isSymmetric() - Method in class slib.sml.sm.core.measures.graph.framework.dag.Sim_Framework_DAG_Set_Braun_Blanquet_1932
-
- isSymmetric() - Method in class slib.sml.sm.core.measures.graph.framework.dag.Sim_Framework_DAG_Set_Dice_1945
-
- isSymmetric() - Method in class slib.sml.sm.core.measures.graph.framework.dag.Sim_Framework_DAG_Set_Jaccard_1901
-
- isSymmetric() - Method in class slib.sml.sm.core.measures.graph.framework.dag.Sim_Framework_DAG_Set_Knappe_2004
-
- isSymmetric() - Method in class slib.sml.sm.core.measures.graph.framework.dag.Sim_Framework_DAG_Set_Korbel_2002
-
- isSymmetric() - Method in class slib.sml.sm.core.measures.graph.framework.dag.Sim_Framework_DAG_Set_Maryland_Bridge_2003
-
- isSymmetric() - Method in class slib.sml.sm.core.measures.graph.framework.dag.Sim_Framework_DAG_Set_Ochiai_1957
-
- isSymmetric() - Method in class slib.sml.sm.core.measures.graph.framework.dag.Sim_Framework_DAG_Set_Simpson_1960
-
- isSymmetric() - Method in class slib.sml.sm.core.measures.graph.framework.dag.Sim_Framework_DAG_Set_Sokal_Sneath_1963
-
- isSymmetric() - Method in class slib.sml.sm.core.measures.graph.framework.dag.Sim_Framework_DAG_Set_Tversky_1977
-
- isSymmetric() - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.experimental.Sim_pairwise_DAG_edge_G_SESAME_2007
-
- isSymmetric() - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.experimental.Sim_pairwise_DAG_edge_Resnik_1995
-
- isSymmetric() - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.experimental.Sim_pairwise_DAG_edge_Slimani_2006
-
- isSymmetric() - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.Sim_pairwise_DAG_edge_Kyogoku_basic_2011
-
- isSymmetric() - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.Sim_pairwise_DAG_edge_Leacock_Chodorow_1998
-
- isSymmetric() - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.Sim_pairwise_DAG_edge_Pekar_Staab_2002
-
- isSymmetric() - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.Sim_pairwise_DAG_edge_Rada_1989
-
- isSymmetric() - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.Sim_pairwise_DAG_edge_Rada_LCA_1989
-
- isSymmetric() - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.Sim_pairwise_DAG_edge_Stojanovic_2001
-
- isSymmetric() - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.Sim_pairwise_DAG_edge_Wu_Palmer_1994
-
- isSymmetric() - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.hybrid.experimental.Sim_pairwise_DAG_edge_Li_2003
-
- isSymmetric() - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.hybrid.experimental.Sim_pairwise_DAG_hybrid_Ranwez_2006
-
- isSymmetric() - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.hybrid.Sim_pairwise_DAG_hybrid_Wang_2007
-
- isSymmetric() - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental.Sim_pairwise_DAG_node_GL_GraSM
-
- isSymmetric() - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental.Sim_pairwise_DAG_node_Harispe_2013
-
- isSymmetric() - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental.Sim_pairwise_DAG_node_Lin_1998_GraSM
-
- isSymmetric() - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental.Sim_pairwise_DAG_node_Mazandu_2012
-
- isSymmetric() - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental.Sim_pairwise_DAG_node_Resnik_1995_Ancestors
-
- isSymmetric() - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental.Sim_pairwise_DAG_node_Resnik_1995_Descendants
-
- isSymmetric() - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental.Sim_pairwise_DAG_node_Resnik_1995_GraSM
-
- isSymmetric() - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental.Sim_pairwise_DAG_node_Schlicker_3WJaccard_SimRel
-
- isSymmetric() - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental.Sim_pairwise_DAG_node_Schlicker_GL_SimRel
-
- isSymmetric() - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental.Sim_pairwise_DAG_node_Schlicker_Jaccard_SimRel
-
- isSymmetric() - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental.Sim_pairwise_DAG_node_Schlicker_Tversky_SimRel
-
- isSymmetric() - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_GL
-
- isSymmetric() - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_IC_Prop_Tversky_Contrast_Model
-
- isSymmetric() - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_IC_Prop_Tversky_Ratio_Model
-
- isSymmetric() - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_IC_Tversky_Contrast_Model
-
- isSymmetric() - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_IC_Tversky_Ratio_Model
-
- isSymmetric() - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_Jaccard_3W_IC
-
- isSymmetric() - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_Jaccard_IC
-
- isSymmetric() - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_Jiang_Conrath_1997
-
- isSymmetric() - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_Jiang_Conrath_1997_Norm
-
- isSymmetric() - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_Lin_1998
-
- isSymmetric() - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_Resnik_1995
-
- isSymmetric() - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_Schlicker_2006_SimRel
-
- isSymmetric() - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_Sim_IC_2010
-
- isSymmetric() - Method in class slib.sml.sm.core.measures.others.pairwise.Sim_pairwise_Random
-
- isSymmetric() - Method in interface slib.sml.sm.core.measures.Sim_Pairwise
-
- searchMax_IC_MICA(URI, URI, Set<URI>, Set<URI>, Map<URI, Double>) - Static method in class slib.sml.sm.core.metrics.ic.utils.IcUtils
-
Search the IC of Most Informative Concept Shared between two sets,
regarding the given metric.
- searchMICA(URI, URI, Set<URI>, Set<URI>, Map<URI, Double>) - Static method in class slib.sml.sm.core.metrics.ic.utils.IcUtils
-
Search the Most Informative Concept Shared between two sets, regarding
the given metric.
- searchMin_pOc_MICA(Set<URI>, Set<URI>, Map<URI, Double>) - Static method in class slib.sml.sm.core.metrics.ic.utils.IcUtils
-
Search the IC of Less Informative Concept Shared between two sets,
regarding the given metric.
- searchMSA(Set<URI>, Map<URI, Integer>) - Static method in class slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.utils.SimDagEdgeUtils
-
Search the Most specific ancestor considering the depth
- semanticMeasureClassName(String) - Static method in class slib.sml.sm.core.utils.SMConstants
-
Return the class Name of the given semantic measure flag
- setBATCH_LIMIT(int) - Method in class slib.sml.smutils.SQLiteUtils
-
Setter of the number of value stored in memory.
- setBATCH_LIMIT_MATRIX_LINE(int) - Method in class slib.sml.smutils.SQLiteUtils
-
Mutator of the number of values stored by line.
- setCachePairwiseResults(boolean) - Method in class slib.sml.sm.core.engine.SM_Engine
-
Set the configuration of the engine regarding pairwise semantic measure
score caching.
- setICconf(ICconf) - Method in class slib.sml.sm.core.utils.SMconf
-
Mutator of the IC configuration.
- setICSvalues(ICconf, Map<URI, Double>) - Method in class slib.sml.sm.core.engine.SM_Engine
-
Set the ICS stored for the given IC configuration to the specified set of
values.
- setK(double) - Method in class slib.sml.sm.core.measures.graph.framework.dag.Sim_Framework_DAG_Set_Knappe_2004
-
- setK(double) - Method in class slib.sml.sm.core.measures.graph.framework.dag.Sim_Framework_DAG_Set_Tversky_1977
-
Setter of the k parameter value
- setLabel(String) - Method in class slib.sml.sm.core.utils.SMconf
-
- setLogBase(Double) - Method in class slib.sml.sm.core.metrics.utils.LogBasedMetric
-
- setLogBase(Conf) - Method in class slib.sml.sm.core.metrics.utils.LogBasedMetric
-
- setLogBase(Double) - Method in interface slib.sml.sm.core.metrics.utils.LogBasedMetricInterface
-
Mutator of the log base associated to the metric.
- setLogBase(Conf) - Method in interface slib.sml.sm.core.metrics.utils.LogBasedMetricInterface
-
Mutator of the log base associated to the metric.
- setPreventIncoherency(boolean) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_Lin_1998
-
Setting this parameter you can decide if incoherences in the input
parameters must be detected (true) or not (false) - default true.
- SHORT_FLAG_PM_SCHLICKER - Static variable in class slib.sml.sm.core.utils.SMConstants
-
- sim(URI, URI, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.graph.framework.dag.Sim_Framework_DAG_Set_abstract
-
- sim(Set<URI>, Set<URI>, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.graph.framework.dag.Sim_Framework_DAG_Set_abstract
-
- sim(Set<URI>, Set<URI>, SMconf) - Method in class slib.sml.sm.core.measures.graph.framework.dag.Sim_Framework_DAG_Set_abstract
-
This provide a way to compare the two sets of concepts which have been
extended considering inference based on the taxonomic hierarchy.
- sim(Set<URI>, Set<URI>, SMconf) - Method in class slib.sml.sm.core.measures.graph.framework.dag.Sim_Framework_DAG_Set_Bader_2003
-
- sim(URI, URI, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.graph.framework.dag.Sim_Framework_DAG_Set_Batet_2010
-
- sim(Set<URI>, Set<URI>, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.graph.framework.dag.Sim_Framework_DAG_Set_Batet_2010
-
- sim(Set<URI>, Set<URI>, SMconf) - Method in class slib.sml.sm.core.measures.graph.framework.dag.Sim_Framework_DAG_Set_Batet_2010
-
- sim(int, Set<URI>, Set<URI>) - Method in class slib.sml.sm.core.measures.graph.framework.dag.Sim_Framework_DAG_Set_Batet_2010
-
Normalized version
- sim(Set<URI>, Set<URI>, SMconf) - Method in class slib.sml.sm.core.measures.graph.framework.dag.Sim_Framework_DAG_Set_Braun_Blanquet_1932
-
- sim(Set<URI>, Set<URI>, SMconf) - Method in class slib.sml.sm.core.measures.graph.framework.dag.Sim_Framework_DAG_Set_Dice_1945
-
- sim(Set<URI>, Set<URI>, SMconf) - Method in class slib.sml.sm.core.measures.graph.framework.dag.Sim_Framework_DAG_Set_Jaccard_1901
-
- sim(Set<URI>, Set<URI>, SMconf) - Method in class slib.sml.sm.core.measures.graph.framework.dag.Sim_Framework_DAG_Set_Knappe_2004
-
- sim(Set<URI>, Set<URI>, SMconf) - Method in class slib.sml.sm.core.measures.graph.framework.dag.Sim_Framework_DAG_Set_Korbel_2002
-
- sim(Set<URI>, Set<URI>, SMconf) - Method in class slib.sml.sm.core.measures.graph.framework.dag.Sim_Framework_DAG_Set_Maryland_Bridge_2003
-
- sim(Set<URI>, Set<URI>, SMconf) - Method in class slib.sml.sm.core.measures.graph.framework.dag.Sim_Framework_DAG_Set_Ochiai_1957
-
- sim(Set<URI>, Set<URI>, SMconf) - Method in class slib.sml.sm.core.measures.graph.framework.dag.Sim_Framework_DAG_Set_Simpson_1960
-
- sim(Set<URI>, Set<URI>, SMconf) - Method in class slib.sml.sm.core.measures.graph.framework.dag.Sim_Framework_DAG_Set_Sokal_Sneath_1963
-
- sim(Set<URI>, Set<URI>, SMconf) - Method in class slib.sml.sm.core.measures.graph.framework.dag.Sim_Framework_DAG_Set_Tversky_1977
-
- sim(Set<URI>, Set<URI>, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.graph.groupwise.dag.Sim_groupwise_DAG_Ali_Deane
-
- sim(Set<URI>, Set<URI>, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.graph.groupwise.dag.Sim_groupwise_DAG_GIC
-
- sim(Set<URI>, Set<URI>, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.graph.groupwise.dag.Sim_groupwise_DAG_Lee_2004
-
- sim(Set<URI>, Set<URI>, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.graph.groupwise.dag.Sim_groupwise_DAG_LP
-
- sim(Set<URI>, Set<URI>, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.graph.groupwise.dag.Sim_groupwise_DAG_NTO
-
- sim(Set<URI>, Set<URI>, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.graph.groupwise.dag.Sim_groupwise_DAG_NTO_MAX
-
- sim(Set<URI>, Set<URI>, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.graph.groupwise.dag.Sim_groupwise_DAG_TO
-
- sim(Set<URI>, Set<URI>, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.graph.groupwise.dag.Sim_groupwise_DAG_UI
-
- sim(URI, URI, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.experimental.Sim_pairwise_DAG_edge_Al_Mubaid_2006
-
- sim(URI, URI, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.experimental.Sim_pairwise_DAG_edge_G_SESAME_2007
-
- sim(URI, URI, Set<URI>, Set<URI>, Map<URI, Double>, Map<URI, Double>, Map<URI, Integer>) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.experimental.Sim_pairwise_DAG_edge_G_SESAME_2007
-
- sim(URI, URI, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.experimental.Sim_pairwise_DAG_edge_Resnik_1995
-
- sim(double, double) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.experimental.Sim_pairwise_DAG_edge_Resnik_1995
-
- sim(URI, URI, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.experimental.Sim_pairwise_DAG_edge_Slimani_2006
-
- sim(URI, URI, Set<URI>, Set<URI>, Map<URI, Integer>) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.experimental.Sim_pairwise_DAG_edge_Slimani_2006
-
- sim(URI, URI, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.Sim_pairwise_DAG_edge_Kyogoku_basic_2011
-
- sim(double, double, double) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.Sim_pairwise_DAG_edge_Kyogoku_basic_2011
-
Compute the semantic similarity considering the given parameters.
- sim(URI, URI, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.Sim_pairwise_DAG_edge_Leacock_Chodorow_1998
-
- sim(Double, double) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.Sim_pairwise_DAG_edge_Leacock_Chodorow_1998
-
Compute the semantic similarity considering the given parameters.
- sim(URI, URI, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.Sim_pairwise_DAG_edge_Pekar_Staab_2002
-
- sim(double, double, double) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.Sim_pairwise_DAG_edge_Pekar_Staab_2002
-
Compute the semantic similarity considering the given parameters.
- sim(URI, URI, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.Sim_pairwise_DAG_edge_Rada_1989
-
- sim(double) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.Sim_pairwise_DAG_edge_Rada_1989
-
Compute the Rada similarity given the distance of the shortest path
linking the two concepts.
- sim(URI, URI, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.Sim_pairwise_DAG_edge_Rada_LCA_1989
-
- sim(Map<URI, Double>, Map<URI, Double>, Set<URI>, Set<URI>, Map<URI, Integer>) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.Sim_pairwise_DAG_edge_Rada_LCA_1989
-
Compute RADA based semantic similarity.
- sim(URI, URI, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.Sim_pairwise_DAG_edge_Stojanovic_2001
-
- sim(URI, URI, Collection<URI>, Collection<URI>, Map<URI, Integer>) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.Sim_pairwise_DAG_edge_Stojanovic_2001
-
Compute the semantic similarity considering the specified parameters.
- sim(URI, URI, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.Sim_pairwise_DAG_edge_Wu_Palmer_1994
-
- sim(URI, URI, Set<URI>, Set<URI>, Map<URI, Double>, Map<URI, Double>, Map<URI, Integer>) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.Sim_pairwise_DAG_edge_Wu_Palmer_1994
-
compute the semantic similarity considering the given parameters.
- sim(URI, URI, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.hybrid.experimental.Sim_pairwise_DAG_edge_Li_2003
-
- sim(double, Set<URI>, Set<URI>, Map<URI, Integer>) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.hybrid.experimental.Sim_pairwise_DAG_edge_Li_2003
-
Revenir sur la recherche du msa de Li Pour Li le msa est le concept de
plus faible profondeur qui appartient au chemin le plus court entre les
deux concepts passant par un ancetre commun des deux concepts
Alpha in [0,1] (best : 0.2) Beta in ]0,1] (best : 0.6)
- sim(URI, URI, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.hybrid.experimental.Sim_pairwise_DAG_hybrid_Ranwez_2006
-
- sim(Set<URI>, Set<URI>, Set<URI>) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.hybrid.experimental.Sim_pairwise_DAG_hybrid_Ranwez_2006
-
- sim(URI, URI, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.hybrid.Sim_pairwise_DAG_hybrid_Wang_2007
-
- sim(URI, URI, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental.Sim_pairwise_DAG_node_GL_GraSM
-
- sim(double, double, double, double) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental.Sim_pairwise_DAG_node_GL_GraSM
-
- sim(URI, URI, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental.Sim_pairwise_DAG_node_Harispe_2013
-
- sim(URI, URI, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental.Sim_pairwise_DAG_node_Lin_1998_GraSM
-
- sim(double, double, double) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental.Sim_pairwise_DAG_node_Lin_1998_GraSM
-
- sim(URI, URI, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental.Sim_pairwise_DAG_node_Mazandu_2012
-
- sim(URI, URI, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental.Sim_pairwise_DAG_node_Resnik_1995_Ancestors
-
- sim(URI, URI, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental.Sim_pairwise_DAG_node_Resnik_1995_Descendants
-
- sim(URI, URI, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental.Sim_pairwise_DAG_node_Resnik_1995_GraSM
-
- sim(double) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental.Sim_pairwise_DAG_node_Resnik_1995_GraSM
-
- sim(URI, URI, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental.Sim_pairwise_DAG_node_Schlicker_3WJaccard_SimRel
-
- sim(double, double, double, double) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental.Sim_pairwise_DAG_node_Schlicker_3WJaccard_SimRel
-
- sim(URI, URI, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental.Sim_pairwise_DAG_node_Schlicker_GL_SimRel
-
- sim(double, double, double, double, double) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental.Sim_pairwise_DAG_node_Schlicker_GL_SimRel
-
- sim(URI, URI, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental.Sim_pairwise_DAG_node_Schlicker_Jaccard_SimRel
-
- sim(double, double, double, double) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental.Sim_pairwise_DAG_node_Schlicker_Jaccard_SimRel
-
- sim(URI, URI, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental.Sim_pairwise_DAG_node_Schlicker_Tversky_SimRel
-
- sim(double, double, double, double, double, double) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental.Sim_pairwise_DAG_node_Schlicker_Tversky_SimRel
-
- sim(URI, URI, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_Feature_Tversky_Contrast_Model
-
- sim(URI, URI, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_Feature_Tversky_Ratio_Model
-
- sim(URI, URI, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_GL
-
- sim(double, double, double, double) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_GL
-
- sim(URI, URI, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_IC_Prop_Tversky_Contrast_Model
-
- sim(double, double, double, double, double, double) - Static method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_IC_Prop_Tversky_Contrast_Model
-
- sim(URI, URI, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_IC_Prop_Tversky_Ratio_Model
-
- sim(double, double, double, double, double) - Static method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_IC_Prop_Tversky_Ratio_Model
-
- sim(URI, URI, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_IC_Tversky_Contrast_Model
-
- sim(double, double, double, double, double, double) - Static method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_IC_Tversky_Contrast_Model
-
- sim(URI, URI, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_IC_Tversky_Ratio_Model
-
- sim(double, double, double, double, double) - Static method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_IC_Tversky_Ratio_Model
-
- sim(URI, URI, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_Jaccard_3W_IC
-
- sim(double, double, double) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_Jaccard_3W_IC
-
Compute the semantic similarity considering the given parameters.
- sim(URI, URI, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_Jaccard_IC
-
- sim(double, double, double) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_Jaccard_IC
-
Compute the semantic similarity considering the given parameters.
- sim(URI, URI, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_Jiang_Conrath_1997
-
- sim(double, double, double) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_Jiang_Conrath_1997
-
Compute the semantic similarity considering the given parameters.
- sim(URI, URI, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_Jiang_Conrath_1997_Norm
-
- sim(double, double, double) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_Jiang_Conrath_1997_Norm
-
Compute the semantic similarity considering the given parameters.
- sim(URI, URI, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_Lin_1998
-
- sim(double, double, double) - Static method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_Lin_1998
-
Compute the similarity considering the given information content values.
- sim(URI, URI, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_Resnik_1995
-
- sim(URI, URI, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_Schlicker_2006_SimRel
-
- sim(double, double, double, double) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_Schlicker_2006_SimRel
-
Compute the semantic similarity considering the given parameters
- sim(URI, URI, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_Sim_IC_2010
-
- sim(double, double, double) - Method in class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_Sim_IC_2010
-
- sim(Set<URI>, Set<URI>, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.others.groupwise.direct.Sim_groupwise_Random
-
- sim(Set<URI>, Set<URI>, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.others.groupwise.direct.vector.VectorSpaceModel
-
- sim(double, double, double) - Method in class slib.sml.sm.core.measures.others.groupwise.indirect.experimental.Sim_groupwise_AVERAGE_NORMALIZED_GOSIM
-
- sim(Set<URI>, Set<URI>, SM_Engine, SMconf, SMconf) - Method in class slib.sml.sm.core.measures.others.groupwise.indirect.experimental.Sim_groupwise_AVERAGE_NORMALIZED_GOSIM
-
- sim(double, double, double) - Method in class slib.sml.sm.core.measures.others.groupwise.indirect.experimental.Sim_groupwise_MAX_NORMALIZED_GOSIM
-
See Sim_groupwise_Max to compute max values
- sim(Set<URI>, Set<URI>, SM_Engine, SMconf, SMconf) - Method in class slib.sml.sm.core.measures.others.groupwise.indirect.experimental.Sim_groupwise_MAX_NORMALIZED_GOSIM
-
- sim(MatrixDouble<URI, URI>) - Static method in class slib.sml.sm.core.measures.others.groupwise.indirect.Sim_groupwise_Average
-
Compute the average of the values stored in the given matrix.
- sim(Set<URI>, Set<URI>, SM_Engine, SMconf, SMconf) - Method in class slib.sml.sm.core.measures.others.groupwise.indirect.Sim_groupwise_Average
-
- sim(Set<URI>, Set<URI>, SM_Engine, SMconf, SMconf) - Method in class slib.sml.sm.core.measures.others.groupwise.indirect.Sim_groupwise_BestMatchAverage
-
- sim(MatrixDouble<URI, URI>) - Static method in class slib.sml.sm.core.measures.others.groupwise.indirect.Sim_groupwise_BestMatchAverage
-
- sim(Set<URI>, Set<URI>, SM_Engine, SMconf, SMconf) - Method in class slib.sml.sm.core.measures.others.groupwise.indirect.Sim_groupwise_BestMatchMax
-
- sim(MatrixDouble<URI, URI>) - Static method in class slib.sml.sm.core.measures.others.groupwise.indirect.Sim_groupwise_BestMatchMax
-
- sim(Set<URI>, Set<URI>, SM_Engine, SMconf, SMconf) - Method in class slib.sml.sm.core.measures.others.groupwise.indirect.Sim_groupwise_Lord_2003
-
- sim(MatrixDouble<URI, URI>) - Static method in class slib.sml.sm.core.measures.others.groupwise.indirect.Sim_groupwise_Lord_2003
-
- sim(MatrixDouble<URI, URI>) - Static method in class slib.sml.sm.core.measures.others.groupwise.indirect.Sim_groupwise_Max
-
- sim(Set<URI>, Set<URI>, SM_Engine, SMconf, SMconf) - Method in class slib.sml.sm.core.measures.others.groupwise.indirect.Sim_groupwise_Max
-
- sim(MatrixDouble<URI, URI>) - Static method in class slib.sml.sm.core.measures.others.groupwise.indirect.Sim_groupwise_Min
-
- sim(Set<URI>, Set<URI>, SM_Engine, SMconf, SMconf) - Method in class slib.sml.sm.core.measures.others.groupwise.indirect.Sim_groupwise_Min
-
- sim(URI, URI, SM_Engine, SMconf) - Method in class slib.sml.sm.core.measures.others.pairwise.Sim_pairwise_Random
-
- sim(Set<URI>, Set<URI>, SM_Engine, SMconf) - Method in interface slib.sml.sm.core.measures.Sim_Groupwise_Direct
-
Compute the similarity between the given sets of concepts considering a
particular configuration.
- sim(Set<URI>, Set<URI>, SM_Engine, SMconf, SMconf) - Method in interface slib.sml.sm.core.measures.Sim_Groupwise_Indirect
-
Compute the similarity between the given sets of concepts considering a particular configuration.
- sim(URI, URI, SM_Engine, SMconf) - Method in interface slib.sml.sm.core.measures.Sim_Pairwise
-
Compute the semantic similarity of the pair of concepts/classes.
- sim(String, String) - Method in class slib.sml.sm.core.measures.string.LevenshteinSimilarity
-
- Sim_DAG_edge_abstract - Class in slib.sml.sm.core.measures.graph.pairwise.dag.edge_based
-
Class used to represent a
Sim_Pairwise_DAG
which relies on a
edge-based approach.
- Sim_DAG_edge_abstract() - Constructor for class slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.Sim_DAG_edge_abstract
-
- Sim_DAG_hybrid_abstract - Class in slib.sml.sm.core.measures.graph.pairwise.dag.hybrid
-
Class used to represent a semantic similarity measure which is based on a
hybrid approach.
- Sim_DAG_hybrid_abstract() - Constructor for class slib.sml.sm.core.measures.graph.pairwise.dag.hybrid.Sim_DAG_hybrid_abstract
-
- Sim_DAG_node_abstract - Interface in slib.sml.sm.core.measures.graph.pairwise.dag.node_based
-
- Sim_Framework_DAG_Set_abstract - Class in slib.sml.sm.core.measures.graph.framework.dag
-
Abstract class used to facilitate implementation of set based measures.
- Sim_Framework_DAG_Set_abstract() - Constructor for class slib.sml.sm.core.measures.graph.framework.dag.Sim_Framework_DAG_Set_abstract
-
- Sim_Framework_DAG_Set_Bader_2003 - Class in slib.sml.sm.core.measures.graph.framework.dag
-
Bader G, Hogue C: An automated method for finding molecular complexes in
large protein interaction networks.
- Sim_Framework_DAG_Set_Bader_2003() - Constructor for class slib.sml.sm.core.measures.graph.framework.dag.Sim_Framework_DAG_Set_Bader_2003
-
- SIM_FRAMEWORK_DAG_SET_BADER_2003 - Static variable in class slib.sml.sm.core.utils.SMConstants
-
- SIM_FRAMEWORK_DAG_SET_BASED - Static variable in class slib.sml.sm.core.utils.SMConstants
-
- Sim_Framework_DAG_Set_Batet_2010 - Class in slib.sml.sm.core.measures.graph.framework.dag
-
Batet M, Sanchez D, Valls A: An ontology-based measure to compute semantic
similarity in biomedicine.
- Sim_Framework_DAG_Set_Batet_2010() - Constructor for class slib.sml.sm.core.measures.graph.framework.dag.Sim_Framework_DAG_Set_Batet_2010
-
- SIM_FRAMEWORK_DAG_SET_BATET_2010 - Static variable in class slib.sml.sm.core.utils.SMConstants
-
- Sim_Framework_DAG_Set_Braun_Blanquet_1932 - Class in slib.sml.sm.core.measures.graph.framework.dag
-
Braun-Blanquet J: Plant sociology: the study of plant communities.
- Sim_Framework_DAG_Set_Braun_Blanquet_1932() - Constructor for class slib.sml.sm.core.measures.graph.framework.dag.Sim_Framework_DAG_Set_Braun_Blanquet_1932
-
- SIM_FRAMEWORK_DAG_SET_BRAUN_BLANQUET_1932 - Static variable in class slib.sml.sm.core.utils.SMConstants
-
- Sim_Framework_DAG_Set_Dice_1945 - Class in slib.sml.sm.core.measures.graph.framework.dag
-
Dice LR: Measures of the Amount of Ecologic Association Between Species.
- Sim_Framework_DAG_Set_Dice_1945() - Constructor for class slib.sml.sm.core.measures.graph.framework.dag.Sim_Framework_DAG_Set_Dice_1945
-
- SIM_FRAMEWORK_DAG_SET_DICE_1945 - Static variable in class slib.sml.sm.core.utils.SMConstants
-
- Sim_Framework_DAG_Set_Jaccard_1901 - Class in slib.sml.sm.core.measures.graph.framework.dag
-
Jaccard P: Distribution de la flore alpine dans le bassin des Dranses et dans
quelques regions voisines.
- Sim_Framework_DAG_Set_Jaccard_1901() - Constructor for class slib.sml.sm.core.measures.graph.framework.dag.Sim_Framework_DAG_Set_Jaccard_1901
-
- SIM_FRAMEWORK_DAG_SET_JACCARD_1901 - Static variable in class slib.sml.sm.core.utils.SMConstants
-
- Sim_Framework_DAG_Set_Knappe_2004 - Class in slib.sml.sm.core.measures.graph.framework.dag
-
Knappe R, Bulskov H, Andreasen T: Perspectives on ontology-based
querying.
- Sim_Framework_DAG_Set_Knappe_2004() - Constructor for class slib.sml.sm.core.measures.graph.framework.dag.Sim_Framework_DAG_Set_Knappe_2004
-
- Sim_Framework_DAG_Set_Knappe_2004(double) - Constructor for class slib.sml.sm.core.measures.graph.framework.dag.Sim_Framework_DAG_Set_Knappe_2004
-
- SIM_FRAMEWORK_DAG_SET_KNAPPE_2004 - Static variable in class slib.sml.sm.core.utils.SMConstants
-
- Sim_Framework_DAG_Set_Korbel_2002 - Class in slib.sml.sm.core.measures.graph.framework.dag
-
Korbel JO, Snel B, Huynen M a, Bork P: SHOT: a web server for the
construction of genome phylogenies.
- Sim_Framework_DAG_Set_Korbel_2002() - Constructor for class slib.sml.sm.core.measures.graph.framework.dag.Sim_Framework_DAG_Set_Korbel_2002
-
- SIM_FRAMEWORK_DAG_SET_KORBEL_2002 - Static variable in class slib.sml.sm.core.utils.SMConstants
-
- Sim_Framework_DAG_Set_Maryland_Bridge_2003 - Class in slib.sml.sm.core.measures.graph.framework.dag
-
Mirkin B, Koonin E: A top-down method for building genome classification
trees with linear binary hierarchies.
- Sim_Framework_DAG_Set_Maryland_Bridge_2003() - Constructor for class slib.sml.sm.core.measures.graph.framework.dag.Sim_Framework_DAG_Set_Maryland_Bridge_2003
-
- SIM_FRAMEWORK_DAG_SET_MARYLAND_BRIDGE_2003 - Static variable in class slib.sml.sm.core.utils.SMConstants
-
- Sim_Framework_DAG_Set_Ochiai_1957 - Class in slib.sml.sm.core.measures.graph.framework.dag
-
Ochiai A: Zoogeographic studies on the soleoid fishes found in Japan and
its neighbouring regions.
- Sim_Framework_DAG_Set_Ochiai_1957() - Constructor for class slib.sml.sm.core.measures.graph.framework.dag.Sim_Framework_DAG_Set_Ochiai_1957
-
- SIM_FRAMEWORK_DAG_SET_OCHIAI_1957 - Static variable in class slib.sml.sm.core.utils.SMConstants
-
- Sim_Framework_DAG_Set_Simpson_1960 - Class in slib.sml.sm.core.measures.graph.framework.dag
-
Simpson GG: Notes on the measurement of faunal resemblance.
- Sim_Framework_DAG_Set_Simpson_1960() - Constructor for class slib.sml.sm.core.measures.graph.framework.dag.Sim_Framework_DAG_Set_Simpson_1960
-
- SIM_FRAMEWORK_DAG_SET_SIMPSON_1960 - Static variable in class slib.sml.sm.core.utils.SMConstants
-
- Sim_Framework_DAG_Set_Sokal_Sneath_1963 - Class in slib.sml.sm.core.measures.graph.framework.dag
-
Sokal RR, Sneath PHA: Principles of numerical taxonomy.
- Sim_Framework_DAG_Set_Sokal_Sneath_1963() - Constructor for class slib.sml.sm.core.measures.graph.framework.dag.Sim_Framework_DAG_Set_Sokal_Sneath_1963
-
- SIM_FRAMEWORK_DAG_SET_SOKAL_SNEATH_1963 - Static variable in class slib.sml.sm.core.utils.SMConstants
-
- Sim_Framework_DAG_Set_Tversky_1977 - Class in slib.sml.sm.core.measures.graph.framework.dag
-
Tversky A: Features of similarity.
- Sim_Framework_DAG_Set_Tversky_1977() - Constructor for class slib.sml.sm.core.measures.graph.framework.dag.Sim_Framework_DAG_Set_Tversky_1977
-
Create a Tversky Contrast Model semantic similarity instance with k
parameter equals to 0.5
- Sim_Framework_DAG_Set_Tversky_1977(double) - Constructor for class slib.sml.sm.core.measures.graph.framework.dag.Sim_Framework_DAG_Set_Tversky_1977
-
Create a Tversky Contrast Model semantic similarity instance.
- SIM_FRAMEWORK_DAG_SET_TVERSKY_1977 - Static variable in class slib.sml.sm.core.utils.SMConstants
-
- Sim_Groupwise - Interface in slib.sml.sm.core.measures
-
Interface used to represent Semantic similarity used to process pairs of groups of vertices.
- SIM_GROUPWISE_ADD_ON - Static variable in class slib.sml.sm.core.utils.SMConstants
-
- Sim_groupwise_Average - Class in slib.sml.sm.core.measures.others.groupwise.indirect
-
Classic Average Measure Assumes score symmetry
- Sim_groupwise_Average() - Constructor for class slib.sml.sm.core.measures.others.groupwise.indirect.Sim_groupwise_Average
-
- SIM_GROUPWISE_AVERAGE - Static variable in class slib.sml.sm.core.utils.SMConstants
-
- Sim_groupwise_AVERAGE_NORMALIZED_GOSIM - Class in slib.sml.sm.core.measures.others.groupwise.indirect.experimental
-

Frohlich H, Speer N, Poustka A, Beissbarth T: GOSim--an R-package for
computation of information theoretic GO similarities between terms and gene
products.
- Sim_groupwise_AVERAGE_NORMALIZED_GOSIM() - Constructor for class slib.sml.sm.core.measures.others.groupwise.indirect.experimental.Sim_groupwise_AVERAGE_NORMALIZED_GOSIM
-
- SIM_GROUPWISE_AVERAGE_NORMALIZED_GOSIM - Static variable in class slib.sml.sm.core.utils.SMConstants
-
- SIM_GROUPWISE_BEST_MATCH_AVERAGE - Static variable in class slib.sml.sm.core.utils.SMConstants
-
- SIM_GROUPWISE_BEST_MATCH_MAX - Static variable in class slib.sml.sm.core.utils.SMConstants
-
- Sim_groupwise_BestMatchAverage - Class in slib.sml.sm.core.measures.others.groupwise.indirect
-
Schlicker A, Domingues FS, Rahnenführer J, Lengauer T: A new measure for
functional similarity of gene products based on Gene Ontology.
- Sim_groupwise_BestMatchAverage() - Constructor for class slib.sml.sm.core.measures.others.groupwise.indirect.Sim_groupwise_BestMatchAverage
-
- Sim_groupwise_BestMatchMax - Class in slib.sml.sm.core.measures.others.groupwise.indirect
-
Schlicker A, Domingues FS, Rahnenführer J, Lengauer T: A new measure for
functional similarity of gene products based on Gene Ontology.
- Sim_groupwise_BestMatchMax() - Constructor for class slib.sml.sm.core.measures.others.groupwise.indirect.Sim_groupwise_BestMatchMax
-
- SIM_GROUPWISE_DAG - Static variable in class slib.sml.sm.core.utils.SMConstants
-
- Sim_groupwise_DAG_abstract - Class in slib.sml.sm.core.measures.graph.groupwise.dag
-
Abstract class used to represent a semantic measure which can be applied
between two sets of concepts expressed in a Directed Acyclic Graph (DAG).
- Sim_groupwise_DAG_abstract() - Constructor for class slib.sml.sm.core.measures.graph.groupwise.dag.Sim_groupwise_DAG_abstract
-
- Sim_groupwise_DAG_Ali_Deane - Class in slib.sml.sm.core.measures.graph.groupwise.dag
-
Ali W, Deane CM.
- Sim_groupwise_DAG_Ali_Deane() - Constructor for class slib.sml.sm.core.measures.graph.groupwise.dag.Sim_groupwise_DAG_Ali_Deane
-
- SIM_GROUPWISE_DAG_ALI_DEANE - Static variable in class slib.sml.sm.core.utils.SMConstants
-
- Sim_groupwise_DAG_GIC - Class in slib.sml.sm.core.measures.graph.groupwise.dag
-
Pesquita C, Faria D, Bastos H: Evaluating gobased semantic similarity
measures.
- Sim_groupwise_DAG_GIC() - Constructor for class slib.sml.sm.core.measures.graph.groupwise.dag.Sim_groupwise_DAG_GIC
-
- SIM_GROUPWISE_DAG_GIC - Static variable in class slib.sml.sm.core.utils.SMConstants
-
- Sim_groupwise_DAG_Lee_2004 - Class in slib.sml.sm.core.measures.graph.groupwise.dag
-
Lee HK, Hsu AK, Sajdak J, Qin J, Pavlidis P: Coexpression analysis of human
genes across many microarray data sets.
- Sim_groupwise_DAG_Lee_2004() - Constructor for class slib.sml.sm.core.measures.graph.groupwise.dag.Sim_groupwise_DAG_Lee_2004
-
- SIM_GROUPWISE_DAG_LEE_2004 - Static variable in class slib.sml.sm.core.utils.SMConstants
-
- Sim_groupwise_DAG_LP - Class in slib.sml.sm.core.measures.graph.groupwise.dag
-
Gentleman R: Visualizing and distances using GO.
- Sim_groupwise_DAG_LP() - Constructor for class slib.sml.sm.core.measures.graph.groupwise.dag.Sim_groupwise_DAG_LP
-
- SIM_GROUPWISE_DAG_LP - Static variable in class slib.sml.sm.core.utils.SMConstants
-
- Sim_groupwise_DAG_NTO - Class in slib.sml.sm.core.measures.graph.groupwise.dag
-
Mistry M, Pavlidis P: Gene Ontology term overlap as a measure of gene
functional similarity.
- Sim_groupwise_DAG_NTO() - Constructor for class slib.sml.sm.core.measures.graph.groupwise.dag.Sim_groupwise_DAG_NTO
-
- SIM_GROUPWISE_DAG_NTO - Static variable in class slib.sml.sm.core.utils.SMConstants
-
- Sim_groupwise_DAG_NTO_MAX - Class in slib.sml.sm.core.measures.graph.groupwise.dag
-
Adaptation of Mistry M, Pavlidis P: Gene Ontology term overlap as a measure
of gene functional similarity.
- Sim_groupwise_DAG_NTO_MAX() - Constructor for class slib.sml.sm.core.measures.graph.groupwise.dag.Sim_groupwise_DAG_NTO_MAX
-
- SIM_GROUPWISE_DAG_NTO_MAX - Static variable in class slib.sml.sm.core.utils.SMConstants
-
- Sim_groupwise_DAG_TO - Class in slib.sml.sm.core.measures.graph.groupwise.dag
-
Mistry M, Pavlidis P: Gene Ontology term overlap as a measure of gene
functional similarity.
- Sim_groupwise_DAG_TO() - Constructor for class slib.sml.sm.core.measures.graph.groupwise.dag.Sim_groupwise_DAG_TO
-
- SIM_GROUPWISE_DAG_TO - Static variable in class slib.sml.sm.core.utils.SMConstants
-
- Sim_groupwise_DAG_UI - Class in slib.sml.sm.core.measures.graph.groupwise.dag
-
Gentleman R: Visualizing and distances using GO.
- Sim_groupwise_DAG_UI() - Constructor for class slib.sml.sm.core.measures.graph.groupwise.dag.Sim_groupwise_DAG_UI
-
- SIM_GROUPWISE_DAG_UI - Static variable in class slib.sml.sm.core.utils.SMConstants
-
- Sim_Groupwise_Direct - Interface in slib.sml.sm.core.measures
-
Interface used to represent direct groupwise measures.
- Sim_groupwise_general_abstract - Class in slib.sml.sm.core.measures.others.groupwise.indirect.experimental
-
- Sim_groupwise_general_abstract() - Constructor for class slib.sml.sm.core.measures.others.groupwise.indirect.experimental.Sim_groupwise_general_abstract
-
- Sim_Groupwise_Indirect - Interface in slib.sml.sm.core.measures
-
Interface used to represent groupwise measures based on a pairwise measures.
- Sim_groupwise_Lord_2003 - Class in slib.sml.sm.core.measures.others.groupwise.indirect
-
Lord P: Investigating semantic similarity measures across the Gene Ontology:
the relationship between sequence and annotation.
- Sim_groupwise_Lord_2003() - Constructor for class slib.sml.sm.core.measures.others.groupwise.indirect.Sim_groupwise_Lord_2003
-
- Sim_groupwise_Max - Class in slib.sml.sm.core.measures.others.groupwise.indirect
-
- Sim_groupwise_Max() - Constructor for class slib.sml.sm.core.measures.others.groupwise.indirect.Sim_groupwise_Max
-
- SIM_GROUPWISE_MAX - Static variable in class slib.sml.sm.core.utils.SMConstants
-
- Sim_groupwise_MAX_NORMALIZED_GOSIM - Class in slib.sml.sm.core.measures.others.groupwise.indirect.experimental
-

Frohlich H, Speer N, Poustka A, Beissbarth T: GOSim--an R-package for
computation of information theoretic GO similarities between terms and gene
products.
- Sim_groupwise_MAX_NORMALIZED_GOSIM() - Constructor for class slib.sml.sm.core.measures.others.groupwise.indirect.experimental.Sim_groupwise_MAX_NORMALIZED_GOSIM
-
- SIM_GROUPWISE_MAX_NORMALIZED_GOSIM - Static variable in class slib.sml.sm.core.utils.SMConstants
-
- Sim_groupwise_Min - Class in slib.sml.sm.core.measures.others.groupwise.indirect
-
- Sim_groupwise_Min() - Constructor for class slib.sml.sm.core.measures.others.groupwise.indirect.Sim_groupwise_Min
-
- SIM_GROUPWISE_MIN - Static variable in class slib.sml.sm.core.utils.SMConstants
-
- SIM_GROUPWISE_OTHERS - Static variable in class slib.sml.sm.core.utils.SMConstants
-
- Sim_groupwise_Random - Class in slib.sml.sm.core.measures.others.groupwise.direct
-
Random measure (used for test)
- Sim_groupwise_Random() - Constructor for class slib.sml.sm.core.measures.others.groupwise.direct.Sim_groupwise_Random
-
- SIM_GROUPWISE_RANDOM - Static variable in class slib.sml.sm.core.utils.SMConstants
-
- SIM_GROUPWISE_SHORT_FLAG - Static variable in class slib.sml.sm.core.utils.SMConstants
-
- SIM_GROUPWISE_SVM - Static variable in class slib.sml.sm.core.utils.SMConstants
-
- Sim_Pairwise - Interface in slib.sml.sm.core.measures
-
Interface used to represent a pairwise measure which can be used to compute
the semantic similarity of a pair of concepts/classes.
- Sim_Pairwise_DAG - Interface in slib.sml.sm.core.measures.graph.pairwise.dag
-
Interface of a semantic similarity measure which can be used to compute the
semantic similarity of two classes/concepts structured in a Directed Acyclic
Graph (DAG).
- Sim_pairwise_DAG_edge_Al_Mubaid_2006 - Class in slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.experimental
-
Al-Mubaid H, Nguyen HA: A cluster-based approach for semantic similarity in
the biomedical domain.
- Sim_pairwise_DAG_edge_Al_Mubaid_2006() - Constructor for class slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.experimental.Sim_pairwise_DAG_edge_Al_Mubaid_2006
-
- SIM_PAIRWISE_DAG_EDGE_BASED - Static variable in class slib.sml.sm.core.utils.SMConstants
-
- Sim_pairwise_DAG_edge_G_SESAME_2007 - Class in slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.experimental
-
TODO Check approximation using depth of concepts
- Sim_pairwise_DAG_edge_G_SESAME_2007() - Constructor for class slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.experimental.Sim_pairwise_DAG_edge_G_SESAME_2007
-
- Sim_pairwise_DAG_edge_Kyogoku_basic_2011 - Class in slib.sml.sm.core.measures.graph.pairwise.dag.edge_based
-
Kyogoku R, Fujimoto R, Ozaki T, Ohkawa T: A method for supporting retrieval
of articles on protein structure analysis considering users ’ intention.
- Sim_pairwise_DAG_edge_Kyogoku_basic_2011() - Constructor for class slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.Sim_pairwise_DAG_edge_Kyogoku_basic_2011
-
- SIM_PAIRWISE_DAG_EDGE_KYOGOKU_BASIC_2011 - Static variable in class slib.sml.sm.core.utils.SMConstants
-
- Sim_pairwise_DAG_edge_Leacock_Chodorow_1998 - Class in slib.sml.sm.core.measures.graph.pairwise.dag.edge_based
-
Implementation of Leacock and Chodorow semantic similarity measure.
- Sim_pairwise_DAG_edge_Leacock_Chodorow_1998() - Constructor for class slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.Sim_pairwise_DAG_edge_Leacock_Chodorow_1998
-
- SIM_PAIRWISE_DAG_EDGE_LEACOCK_CHODOROW_1998 - Static variable in class slib.sml.sm.core.utils.SMConstants
-
- Sim_pairwise_DAG_edge_Li_2003 - Class in slib.sml.sm.core.measures.graph.pairwise.dag.hybrid.experimental
-
Li Y, Bandar ZA, McLean D: An approach for measuring semantic similarity
between words using multiple information sources.
- Sim_pairwise_DAG_edge_Li_2003() - Constructor for class slib.sml.sm.core.measures.graph.pairwise.dag.hybrid.experimental.Sim_pairwise_DAG_edge_Li_2003
-
- SIM_PAIRWISE_DAG_EDGE_LI_2003 - Static variable in class slib.sml.sm.core.utils.SMConstants
-
- Sim_pairwise_DAG_edge_Pekar_Staab_2002 - Class in slib.sml.sm.core.measures.graph.pairwise.dag.edge_based
-
Pekar V, Staab S: Taxonomy learning: factoring the structure of a taxonomy
into a semantic classification decision.
- Sim_pairwise_DAG_edge_Pekar_Staab_2002() - Constructor for class slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.Sim_pairwise_DAG_edge_Pekar_Staab_2002
-
- SIM_PAIRWISE_DAG_EDGE_PEKAR_STAAB_2002 - Static variable in class slib.sml.sm.core.utils.SMConstants
-
- Sim_pairwise_DAG_edge_Rada_1989 - Class in slib.sml.sm.core.measures.graph.pairwise.dag.edge_based
-
Rada R, Mili H, Bicknell E, Blettner M: Development and application of a
metric on semantic nets.
- Sim_pairwise_DAG_edge_Rada_1989() - Constructor for class slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.Sim_pairwise_DAG_edge_Rada_1989
-
- SIM_PAIRWISE_DAG_EDGE_RADA_1989 - Static variable in class slib.sml.sm.core.utils.SMConstants
-
- Sim_pairwise_DAG_edge_Rada_LCA_1989 - Class in slib.sml.sm.core.measures.graph.pairwise.dag.edge_based
-
Rada R, Mili H, Bicknell E, Blettner M: Development and application of a
metric on semantic nets.
- Sim_pairwise_DAG_edge_Rada_LCA_1989() - Constructor for class slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.Sim_pairwise_DAG_edge_Rada_LCA_1989
-
- SIM_PAIRWISE_DAG_EDGE_RADA_LCA_1989 - Static variable in class slib.sml.sm.core.utils.SMConstants
-
- Sim_pairwise_DAG_edge_Resnik_1995 - Class in slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.experimental
-
Faites au feeling par seb, verifier quelle est proche de celle de resnik
- Sim_pairwise_DAG_edge_Resnik_1995() - Constructor for class slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.experimental.Sim_pairwise_DAG_edge_Resnik_1995
-
- SIM_PAIRWISE_DAG_EDGE_RESNIK_1995 - Static variable in class slib.sml.sm.core.utils.SMConstants
-
- Sim_pairwise_DAG_edge_Slimani_2006 - Class in slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.experimental
-
Slimani T, Boutheina BY, Mellouli K: A New Similarity Measure based on
Edge Counting.
- Sim_pairwise_DAG_edge_Slimani_2006() - Constructor for class slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.experimental.Sim_pairwise_DAG_edge_Slimani_2006
-
- SIM_PAIRWISE_DAG_EDGE_SLIMANI_2006 - Static variable in class slib.sml.sm.core.utils.SMConstants
-
- Sim_pairwise_DAG_edge_Stojanovic_2001 - Class in slib.sml.sm.core.measures.graph.pairwise.dag.edge_based
-
Stojanovic N, Alexander M, Staab S, Rudi S, York S: SEAL - A Framework for
Developing SEmantic PortALs.
- Sim_pairwise_DAG_edge_Stojanovic_2001() - Constructor for class slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.Sim_pairwise_DAG_edge_Stojanovic_2001
-
- SIM_PAIRWISE_DAG_EDGE_STOJANOVIC_2001 - Static variable in class slib.sml.sm.core.utils.SMConstants
-
- Sim_pairwise_DAG_edge_Wu_Palmer_1994 - Class in slib.sml.sm.core.measures.graph.pairwise.dag.edge_based
-
Wu Z, Palmer M: Verb semantics and lexical selection.
- Sim_pairwise_DAG_edge_Wu_Palmer_1994() - Constructor for class slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.Sim_pairwise_DAG_edge_Wu_Palmer_1994
-
- SIM_PAIRWISE_DAG_EDGE_WU_PALMER_1994 - Static variable in class slib.sml.sm.core.utils.SMConstants
-
- SIM_PAIRWISE_DAG_HYBRID_BASED - Static variable in class slib.sml.sm.core.utils.SMConstants
-
- Sim_pairwise_DAG_hybrid_Ranwez_2006 - Class in slib.sml.sm.core.measures.graph.pairwise.dag.hybrid.experimental
-
Ranwez S, Ranwez V, Villerd J, Crampes M: Ontological Distance Measures
for Information Visualisation on Conceptual Maps.
- Sim_pairwise_DAG_hybrid_Ranwez_2006() - Constructor for class slib.sml.sm.core.measures.graph.pairwise.dag.hybrid.experimental.Sim_pairwise_DAG_hybrid_Ranwez_2006
-
- SIM_PAIRWISE_DAG_HYBRID_RANWEZ_2006 - Static variable in class slib.sml.sm.core.utils.SMConstants
-
- Sim_pairwise_DAG_hybrid_Wang_2007 - Class in slib.sml.sm.core.measures.graph.pairwise.dag.hybrid
-
Wang JZ, Du Z, Payattakool R, Yu PS, Chen C-F: A new method to measure the semantic similarity of GO terms.
- Sim_pairwise_DAG_hybrid_Wang_2007() - Constructor for class slib.sml.sm.core.measures.graph.pairwise.dag.hybrid.Sim_pairwise_DAG_hybrid_Wang_2007
-
- SIM_PAIRWISE_DAG_NODE_BASED - Static variable in class slib.sml.sm.core.utils.SMConstants
-
- Sim_pairwise_DAG_node_Constants - Class in slib.sml.sm.core.measures.graph.pairwise.dag.node_based
-
- Sim_pairwise_DAG_node_Constants() - Constructor for class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_Constants
-
- Sim_pairwise_DAG_node_Feature_Tversky_Contrast_Model - Class in slib.sml.sm.core.measures.graph.pairwise.dag.node_based
-
Feature-based formulation of the Tversky Ratio Model.
- Sim_pairwise_DAG_node_Feature_Tversky_Contrast_Model() - Constructor for class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_Feature_Tversky_Contrast_Model
-
- Sim_pairwise_DAG_node_Feature_Tversky_Contrast_Model(double, double, double) - Constructor for class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_Feature_Tversky_Contrast_Model
-
Create a Tversky measure specifying gamma, alpha and beta parameters
- SIM_PAIRWISE_DAG_NODE_FEATURE_TVERSKY_CONTRAST_MODEL - Static variable in class slib.sml.sm.core.utils.SMConstants
-
- Sim_pairwise_DAG_node_Feature_Tversky_Ratio_Model - Class in slib.sml.sm.core.measures.graph.pairwise.dag.node_based
-
Feature-based formulation of the Tversky Ratio Model.
- Sim_pairwise_DAG_node_Feature_Tversky_Ratio_Model() - Constructor for class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_Feature_Tversky_Ratio_Model
-
- Sim_pairwise_DAG_node_Feature_Tversky_Ratio_Model(double, double) - Constructor for class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_Feature_Tversky_Ratio_Model
-
Create a Tversky measure specifying alpha and beta parameters
- SIM_PAIRWISE_DAG_NODE_FEATURE_TVERSKY_RATIO_MODEL - Static variable in class slib.sml.sm.core.utils.SMConstants
-
- Sim_pairwise_DAG_node_GL - Class in slib.sml.sm.core.measures.graph.pairwise.dag.node_based
-
Gower and Legendre IC-based abstract expression.
- Sim_pairwise_DAG_node_GL() - Constructor for class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_GL
-
- SIM_PAIRWISE_DAG_NODE_GL - Static variable in class slib.sml.sm.core.utils.SMConstants
-
- Sim_pairwise_DAG_node_GL_GraSM - Class in slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental
-
- Sim_pairwise_DAG_node_GL_GraSM() - Constructor for class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental.Sim_pairwise_DAG_node_GL_GraSM
-
- SIM_PAIRWISE_DAG_NODE_GL_GRASM - Static variable in class slib.sml.sm.core.utils.SMConstants
-
- Sim_pairwise_DAG_node_Harispe_2013 - Class in slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental
-
- Sim_pairwise_DAG_node_Harispe_2013() - Constructor for class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental.Sim_pairwise_DAG_node_Harispe_2013
-
- SIM_PAIRWISE_DAG_NODE_HARISPE_2013 - Static variable in class slib.sml.sm.core.utils.SMConstants
-
- SIM_PAIRWISE_DAG_NODE_IC_ANNOT - Static variable in class slib.sml.sm.core.utils.SMConstants
-
- SIM_PAIRWISE_DAG_NODE_IC_INTRINSIC - Static variable in class slib.sml.sm.core.utils.SMConstants
-
- Sim_pairwise_DAG_node_IC_Prop_Tversky_Contrast_Model - Class in slib.sml.sm.core.measures.graph.pairwise.dag.node_based
-
IC formulation of Tversky Ratio Model
- Sim_pairwise_DAG_node_IC_Prop_Tversky_Contrast_Model() - Constructor for class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_IC_Prop_Tversky_Contrast_Model
-
- Sim_pairwise_DAG_node_IC_Prop_Tversky_Contrast_Model(double, double, double) - Constructor for class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_IC_Prop_Tversky_Contrast_Model
-
Create a Tversky measure specifying gamma, alpha and beta parameters
- Sim_pairwise_DAG_node_IC_Prop_Tversky_Ratio_Model - Class in slib.sml.sm.core.measures.graph.pairwise.dag.node_based
-
IC formulation of Tversky Ratio Model
- Sim_pairwise_DAG_node_IC_Prop_Tversky_Ratio_Model() - Constructor for class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_IC_Prop_Tversky_Ratio_Model
-
- Sim_pairwise_DAG_node_IC_Prop_Tversky_Ratio_Model(double, double) - Constructor for class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_IC_Prop_Tversky_Ratio_Model
-
Create a Tversky measure specifying alpha and beta parameters
- Sim_pairwise_DAG_node_IC_Tversky_Contrast_Model - Class in slib.sml.sm.core.measures.graph.pairwise.dag.node_based
-
IC formulation of Tversky Ratio Model
- Sim_pairwise_DAG_node_IC_Tversky_Contrast_Model() - Constructor for class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_IC_Tversky_Contrast_Model
-
- Sim_pairwise_DAG_node_IC_Tversky_Contrast_Model(double, double, double) - Constructor for class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_IC_Tversky_Contrast_Model
-
Create a Tversky measure specifying gamma, alpha and beta parameters
- Sim_pairwise_DAG_node_IC_Tversky_Ratio_Model - Class in slib.sml.sm.core.measures.graph.pairwise.dag.node_based
-
IC formulation of Tversky Ratio Model
- Sim_pairwise_DAG_node_IC_Tversky_Ratio_Model() - Constructor for class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_IC_Tversky_Ratio_Model
-
- Sim_pairwise_DAG_node_IC_Tversky_Ratio_Model(double, double) - Constructor for class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_IC_Tversky_Ratio_Model
-
Create a Tversky measure specifying alpha and beta parameters
- Sim_pairwise_DAG_node_Jaccard_3W_IC - Class in slib.sml.sm.core.measures.graph.pairwise.dag.node_based
-
IC formulation of the Jaccard measure.
- Sim_pairwise_DAG_node_Jaccard_3W_IC() - Constructor for class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_Jaccard_3W_IC
-
- SIM_PAIRWISE_DAG_NODE_JACCARD_3W_IC - Static variable in class slib.sml.sm.core.utils.SMConstants
-
- Sim_pairwise_DAG_node_Jaccard_IC - Class in slib.sml.sm.core.measures.graph.pairwise.dag.node_based
-
IC formulation of the Jaccard measure.
- Sim_pairwise_DAG_node_Jaccard_IC() - Constructor for class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_Jaccard_IC
-
- SIM_PAIRWISE_DAG_NODE_JACCARD_IC - Static variable in class slib.sml.sm.core.utils.SMConstants
-
- Sim_pairwise_DAG_node_Jiang_Conrath_1997 - Class in slib.sml.sm.core.measures.graph.pairwise.dag.node_based
-
Jiang J, Conrath D: Semantic Similarity Based on Corpus Statistics and
Lexical Taxonomy.
- Sim_pairwise_DAG_node_Jiang_Conrath_1997() - Constructor for class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_Jiang_Conrath_1997
-
- SIM_PAIRWISE_DAG_NODE_JIANG_CONRATH_1997 - Static variable in class slib.sml.sm.core.utils.SMConstants
-
- Sim_pairwise_DAG_node_Jiang_Conrath_1997_Norm - Class in slib.sml.sm.core.measures.graph.pairwise.dag.node_based
-
Jiang J, Conrath D: Semantic Similarity Based on Corpus Statistics and
Lexical Taxonomy.
- Sim_pairwise_DAG_node_Jiang_Conrath_1997_Norm() - Constructor for class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_Jiang_Conrath_1997_Norm
-
- SIM_PAIRWISE_DAG_NODE_JIANG_CONRATH_1997_NORM - Static variable in class slib.sml.sm.core.utils.SMConstants
-
- Sim_pairwise_DAG_node_Lin_1998 - Class in slib.sml.sm.core.measures.graph.pairwise.dag.node_based
-
Implementation of the measure proposed by Lin for comparing two concepts
defined in a taxonomy.
- Sim_pairwise_DAG_node_Lin_1998() - Constructor for class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_Lin_1998
-
- SIM_PAIRWISE_DAG_NODE_LIN_1998 - Static variable in class slib.sml.sm.core.utils.SMConstants
-
- Sim_pairwise_DAG_node_Lin_1998_GraSM - Class in slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental
-
Lin D: An Information-Theoretic Definition of Similarity.
- Sim_pairwise_DAG_node_Lin_1998_GraSM() - Constructor for class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental.Sim_pairwise_DAG_node_Lin_1998_GraSM
-
- SIM_PAIRWISE_DAG_NODE_LIN_1998_GraSM - Static variable in class slib.sml.sm.core.utils.SMConstants
-
- Sim_pairwise_DAG_node_Mazandu_2012 - Class in slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental
-
Implementation of the Universal similarity measure i.e.
- Sim_pairwise_DAG_node_Mazandu_2012() - Constructor for class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental.Sim_pairwise_DAG_node_Mazandu_2012
-
- SIM_PAIRWISE_DAG_NODE_MAZANDU_2012 - Static variable in class slib.sml.sm.core.utils.SMConstants
-
- Sim_pairwise_DAG_node_Resnik_1995 - Class in slib.sml.sm.core.measures.graph.pairwise.dag.node_based
-
Resnik P: Using Information Content to Evaluate Semantic Similarity in a
Taxonomy.
- Sim_pairwise_DAG_node_Resnik_1995() - Constructor for class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_Resnik_1995
-
- SIM_PAIRWISE_DAG_NODE_RESNIK_1995 - Static variable in class slib.sml.sm.core.utils.SMConstants
-
- Sim_pairwise_DAG_node_Resnik_1995_Ancestors - Class in slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental
-
Resnik P: Using Information Content to Evaluate Semantic Similarity in a
Taxonomy.
- Sim_pairwise_DAG_node_Resnik_1995_Ancestors() - Constructor for class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental.Sim_pairwise_DAG_node_Resnik_1995_Ancestors
-
- SIM_PAIRWISE_DAG_NODE_RESNIK_1995_ANCESTORS - Static variable in class slib.sml.sm.core.utils.SMConstants
-
- Sim_pairwise_DAG_node_Resnik_1995_Descendants - Class in slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental
-
Resnik P: Using Information Content to Evaluate Semantic Similarity in a
Taxonomy.
- Sim_pairwise_DAG_node_Resnik_1995_Descendants() - Constructor for class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental.Sim_pairwise_DAG_node_Resnik_1995_Descendants
-
- SIM_PAIRWISE_DAG_NODE_RESNIK_1995_DESCENDANTS - Static variable in class slib.sml.sm.core.utils.SMConstants
-
- Sim_pairwise_DAG_node_Resnik_1995_GraSM - Class in slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental
-
Resnik P: Using Information Content to Evaluate Semantic Similarity in a
Taxonomy.
- Sim_pairwise_DAG_node_Resnik_1995_GraSM() - Constructor for class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental.Sim_pairwise_DAG_node_Resnik_1995_GraSM
-
- SIM_PAIRWISE_DAG_NODE_RESNIK_1995_GraSM - Static variable in class slib.sml.sm.core.utils.SMConstants
-
- SIM_PAIRWISE_DAG_NODE_SCHLICKER_2006 - Static variable in class slib.sml.sm.core.utils.SMConstants
-
- Sim_pairwise_DAG_node_Schlicker_2006_SimRel - Class in slib.sml.sm.core.measures.graph.pairwise.dag.node_based
-
Schlicker, Andreas, et al.
- Sim_pairwise_DAG_node_Schlicker_2006_SimRel() - Constructor for class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_Schlicker_2006_SimRel
-
- SIM_PAIRWISE_DAG_NODE_SCHLICKER_3WJACCARD - Static variable in class slib.sml.sm.core.utils.SMConstants
-
- Sim_pairwise_DAG_node_Schlicker_3WJaccard_SimRel - Class in slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental
-
- Sim_pairwise_DAG_node_Schlicker_3WJaccard_SimRel() - Constructor for class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental.Sim_pairwise_DAG_node_Schlicker_3WJaccard_SimRel
-
- SIM_PAIRWISE_DAG_NODE_SCHLICKER_GL - Static variable in class slib.sml.sm.core.utils.SMConstants
-
- Sim_pairwise_DAG_node_Schlicker_GL_SimRel - Class in slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental
-
- Sim_pairwise_DAG_node_Schlicker_GL_SimRel() - Constructor for class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental.Sim_pairwise_DAG_node_Schlicker_GL_SimRel
-
- SIM_PAIRWISE_DAG_NODE_SCHLICKER_JACCARD - Static variable in class slib.sml.sm.core.utils.SMConstants
-
- Sim_pairwise_DAG_node_Schlicker_Jaccard_SimRel - Class in slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental
-
- Sim_pairwise_DAG_node_Schlicker_Jaccard_SimRel() - Constructor for class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental.Sim_pairwise_DAG_node_Schlicker_Jaccard_SimRel
-
- SIM_PAIRWISE_DAG_NODE_SCHLICKER_TVERSKY - Static variable in class slib.sml.sm.core.utils.SMConstants
-
- Sim_pairwise_DAG_node_Schlicker_Tversky_SimRel - Class in slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental
-
- Sim_pairwise_DAG_node_Schlicker_Tversky_SimRel() - Constructor for class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental.Sim_pairwise_DAG_node_Schlicker_Tversky_SimRel
-
- Sim_pairwise_DAG_node_Sim_IC_2010 - Class in slib.sml.sm.core.measures.graph.pairwise.dag.node_based
-
Effectively integrating information content and structural relationship to
improve the GO-based similarity measure between proteins.
- Sim_pairwise_DAG_node_Sim_IC_2010() - Constructor for class slib.sml.sm.core.measures.graph.pairwise.dag.node_based.Sim_pairwise_DAG_node_Sim_IC_2010
-
- SIM_PAIRWISE_DAG_NODE_SIM_IC_2010 - Static variable in class slib.sml.sm.core.utils.SMConstants
-
- SIM_PAIRWISE_DAG_NODE_TVERSKY_IC_CONTRAST_MODEL - Static variable in class slib.sml.sm.core.utils.SMConstants
-
- SIM_PAIRWISE_DAG_NODE_TVERSKY_IC_PROP_CONTRAST_MODEL - Static variable in class slib.sml.sm.core.utils.SMConstants
-
- SIM_PAIRWISE_DAG_NODE_TVERSKY_IC_PROP_RATIO_MODEL - Static variable in class slib.sml.sm.core.utils.SMConstants
-
- SIM_PAIRWISE_DAG_NODE_TVERSKY_IC_RATIO_MODEL - Static variable in class slib.sml.sm.core.utils.SMConstants
-
- SIM_PAIRWISE_GENERAL - Static variable in class slib.sml.sm.core.utils.SMConstants
-
- Sim_pairwise_Random - Class in slib.sml.sm.core.measures.others.pairwise
-
Random measure for tests
- Sim_pairwise_Random() - Constructor for class slib.sml.sm.core.measures.others.pairwise.Sim_pairwise_Random
-
- SIM_PAIRWISE_RANDOM - Static variable in class slib.sml.sm.core.utils.SMConstants
-
- SIM_PAIRWISE_SHORT_FLAG - Static variable in class slib.sml.sm.core.utils.SMConstants
-
- SimDagEdgeUtils - Class in slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.utils
-
Utility class for edge-based measures.
- SimDagEdgeUtils() - Constructor for class slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.utils.SimDagEdgeUtils
-
- SimDagHybridUtils - Class in slib.sml.sm.core.measures.graph.pairwise.dag.hybrid.utils
-
- SimDagHybridUtils() - Constructor for class slib.sml.sm.core.measures.graph.pairwise.dag.hybrid.utils.SimDagHybridUtils
-
- slib.sml - package slib.sml
-
- slib.sml.sm - package slib.sml.sm
-
- slib.sml.sm.core.engine - package slib.sml.sm.core.engine
-
- slib.sml.sm.core.measures - package slib.sml.sm.core.measures
-
- slib.sml.sm.core.measures.graph.framework.dag - package slib.sml.sm.core.measures.graph.framework.dag
-
- slib.sml.sm.core.measures.graph.groupwise.dag - package slib.sml.sm.core.measures.graph.groupwise.dag
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- slib.sml.sm.core.measures.graph.pairwise.dag - package slib.sml.sm.core.measures.graph.pairwise.dag
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- slib.sml.sm.core.measures.graph.pairwise.dag.edge_based - package slib.sml.sm.core.measures.graph.pairwise.dag.edge_based
-
- slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.experimental - package slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.experimental
-
- slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.utils - package slib.sml.sm.core.measures.graph.pairwise.dag.edge_based.utils
-
- slib.sml.sm.core.measures.graph.pairwise.dag.hybrid - package slib.sml.sm.core.measures.graph.pairwise.dag.hybrid
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- slib.sml.sm.core.measures.graph.pairwise.dag.hybrid.experimental - package slib.sml.sm.core.measures.graph.pairwise.dag.hybrid.experimental
-
- slib.sml.sm.core.measures.graph.pairwise.dag.hybrid.utils - package slib.sml.sm.core.measures.graph.pairwise.dag.hybrid.utils
-
- slib.sml.sm.core.measures.graph.pairwise.dag.node_based - package slib.sml.sm.core.measures.graph.pairwise.dag.node_based
-
- slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental - package slib.sml.sm.core.measures.graph.pairwise.dag.node_based.experimental
-
- slib.sml.sm.core.measures.others.groupwise.direct - package slib.sml.sm.core.measures.others.groupwise.direct
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- slib.sml.sm.core.measures.others.groupwise.direct.vector - package slib.sml.sm.core.measures.others.groupwise.direct.vector
-
- slib.sml.sm.core.measures.others.groupwise.indirect - package slib.sml.sm.core.measures.others.groupwise.indirect
-
- slib.sml.sm.core.measures.others.groupwise.indirect.experimental - package slib.sml.sm.core.measures.others.groupwise.indirect.experimental
-
- slib.sml.sm.core.measures.others.pairwise - package slib.sml.sm.core.measures.others.pairwise
-
- slib.sml.sm.core.measures.string - package slib.sml.sm.core.measures.string
-
- slib.sml.sm.core.metrics.ic - package slib.sml.sm.core.metrics.ic
-
- slib.sml.sm.core.metrics.ic.annot - package slib.sml.sm.core.metrics.ic.annot
-
- slib.sml.sm.core.metrics.ic.topo - package slib.sml.sm.core.metrics.ic.topo
-
- slib.sml.sm.core.metrics.ic.utils - package slib.sml.sm.core.metrics.ic.utils
-
- slib.sml.sm.core.metrics.utils - package slib.sml.sm.core.metrics.utils
-
- slib.sml.sm.core.metrics.vector - package slib.sml.sm.core.metrics.vector
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- slib.sml.sm.core.utils - package slib.sml.sm.core.utils
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- slib.sml.smutils - package slib.sml.smutils
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- SM_Engine - Class in slib.sml.sm.core.engine
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This class defines a Semantic Measures Engine which gives access to several
methods commonly used to define ontology-based semantic measures.
- SM_Engine(G) - Constructor for class slib.sml.sm.core.engine.SM_Engine
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Constructor of an engine associated to the given graph.
- SMconf - Class in slib.sml.sm.core.utils
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Representation of the configuration of a semantic measure.
- SMconf(String) - Constructor for class slib.sml.sm.core.utils.SMconf
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Build an instance of configuration considering the given flag.
- SMconf(String, String) - Constructor for class slib.sml.sm.core.utils.SMconf
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Build an instance of configuration considering the given id and flag.
- SMconf(String, String, String) - Constructor for class slib.sml.sm.core.utils.SMconf
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Build an instance of configuration considering the given id, flag and
label.
- SMconf(String, ICconf) - Constructor for class slib.sml.sm.core.utils.SMconf
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Build an instance of configuration considering the given flag and
Information Content configuration.
- SMconf(String, String, ICconf) - Constructor for class slib.sml.sm.core.utils.SMconf
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Build an instance of configuration considering the given flag and
Information Content configuration.
- SMconf(String, String, String, ICconf) - Constructor for class slib.sml.sm.core.utils.SMconf
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Build an instance of configuration considering the given id, flag and
Information Content configuration.
- SMConstants - Class in slib.sml.sm.core.utils
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Class used to defined Semantic Measures constants such as measures flags.
- SMConstants() - Constructor for class slib.sml.sm.core.utils.SMConstants
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- SMParams - Enum in slib.sml.sm.core.utils
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- SMProxResultStorage - Class in slib.sml.sm.core.engine
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- SMProxResultStorage() - Constructor for class slib.sml.sm.core.engine.SMProxResultStorage
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- SMutils - Class in slib.sml.sm.core.utils
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Class used to define utility methods.
- SMutils() - Constructor for class slib.sml.sm.core.utils.SMutils
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- splitSize_default - Static variable in class slib.sml.smutils.ResultsMerger
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- SQLiteUtils - Class in slib.sml.smutils
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Class used to process large SME results files through SQLlite databases
Processed file must respect the following restrictions: - tab separated
format - containing a header (first non-empty line which do not start with !
).
- SQLiteUtils() - Constructor for class slib.sml.smutils.SQLiteUtils
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