A B C E F G H I M N O P Q S T U V W X _ 

A

acceptedTools - Static variable in class slib.tools.smltoolkit.SmlToolKitCliCst
 
ActionParamsUtils - Class in slib.tools.smltoolkit.sm.cli.core.utils
 
ActionParamsUtils() - Constructor for class slib.tools.smltoolkit.sm.cli.core.utils.ActionParamsUtils
 
ActionsParams - Enum in slib.tools.smltoolkit.sm.cli.core.utils
 
admittedProfiles - Static variable in class slib.tools.smltoolkit.sm.cli.core.cmd.SmCmdHandlerCst
 
annotsFormat - Variable in class slib.tools.smltoolkit.sm.cli.core.utils.SML_SM_module_XML_block_conf
 
annotsPath - Variable in class slib.tools.smltoolkit.sm.cli.core.utils.SML_SM_module_XML_block_conf
 
aspect - Variable in class slib.tools.smltoolkit.sm.cli.core.utils.SML_SM_module_XML_block_conf
 

B

buffer - Variable in class slib.tools.smltoolkit.sm.cli.core.utils.calc.ThreadResultsQueryLoader
 
buildSML_FilterGAF2_XML_block(String) - Static method in class slib.tools.smltoolkit.sm.cli.core.utils.XMLConfUtils
this parameter can be used to filter the GO terms associated to a gene product when the provided annotation file is in GAF2 format.
buildSML_SM_module_XML_block_GO_PROFILE(SML_SM_module_XML_block_conf) - Static method in class slib.tools.smltoolkit.sm.cli.core.utils.XMLConfUtils
Build a String representation of the Semantic Measures XML tag considering the given configuration.
buildSML_SM_module_XML_block_MESH_PROFILE(SML_SM_module_XML_block_conf) - Static method in class slib.tools.smltoolkit.sm.cli.core.utils.XMLConfUtils
 

C

C1_ATTR - Static variable in class slib.tools.smltoolkit.sm.cli.conf.xml.utils.Sm_XML_Cst
 
C2_ATTR - Static variable in class slib.tools.smltoolkit.sm.cli.conf.xml.utils.Sm_XML_Cst
 
call() - Method in class slib.tools.smltoolkit.sm.cli.core.utils.calc.ConceptToConcept_Thread
 
call() - Method in class slib.tools.smltoolkit.sm.cli.core.utils.calc.EntityToEntity_Thread
 
close() - Method in class slib.tools.smltoolkit.sm.cli.core.utils.QueryConceptsIterator
 
ConceptToConcept_Thread - Class in slib.tools.smltoolkit.sm.cli.core.utils.calc
 
ConceptToConcept_Thread(PoolWorker, Collection<QueryEntry>, SmCli, SMQueryParam) - Constructor for class slib.tools.smltoolkit.sm.cli.core.utils.calc.ConceptToConcept_Thread
 
conf - Variable in class slib.tools.smltoolkit.sm.cli.core.SmCli
 

E

E1_ATTR - Static variable in class slib.tools.smltoolkit.sm.cli.conf.xml.utils.Sm_XML_Cst
 
E2_ATTR - Static variable in class slib.tools.smltoolkit.sm.cli.conf.xml.utils.Sm_XML_Cst
 
EntityToEntity_Thread - Class in slib.tools.smltoolkit.sm.cli.core.utils.calc
 
EntityToEntity_Thread(PoolWorker, Collection<QueryEntry>, SmCli, int, SMQueryParam) - Constructor for class slib.tools.smltoolkit.sm.cli.core.utils.calc.EntityToEntity_Thread
 
ERROR_NB_GRAPH_SPEC - Static variable in class slib.tools.smltoolkit.sm.cli.conf.xml.utils.Sm_XML_Cst
 
errorMissingXMLconfOrProfile - Static variable in class slib.tools.smltoolkit.sm.cli.core.cmd.SmCmdHandlerCst
 
errorMissingXMLconfOrProfile - Static variable in class slib.tools.smltoolkit.sm.cli.profile.go.SmProfileGOCst
 
errorTool - Static variable in class slib.tools.smltoolkit.SmlToolKitCliCst
 
execute(String[]) - Method in class slib.tools.smltoolkit.sm.cli.core.SmCli
 
execute(String) - Method in class slib.tools.smltoolkit.sm.cli.core.SmCli
Execute from configuration file
execute(String[]) - Method in class slib.tools.smltoolkit.sm.cli.profile.go.SmProfile_GO
 
execute(String[]) - Method in class slib.tools.smltoolkit.sm.cli.profile.mesh.SmProfile_MeSH
 
execute(String[]) - Method in interface slib.tools.smltoolkit.SmlModuleCLI
 

F

FileWriterUtil - Class in slib.tools.smltoolkit.sm.cli.core.utils
Dummy class used to write a String into a file
FileWriterUtil() - Constructor for class slib.tools.smltoolkit.sm.cli.core.utils.FileWriterUtil
 
filter - Variable in class slib.tools.smltoolkit.sm.cli.core.utils.SML_SM_module_XML_block_conf
 
FLAG_ATTR - Static variable in class slib.tools.smltoolkit.sm.cli.conf.xml.utils.Sm_XML_Cst
 
FORCE_EXEC_ATTR - Static variable in class slib.tools.smltoolkit.sm.cli.conf.xml.utils.Sm_XML_Cst
 

G

gConfGroupwise - Variable in class slib.tools.smltoolkit.sm.cli.conf.xml.loader.Sm_XMLConfLoader
 
gConfICs - Variable in class slib.tools.smltoolkit.sm.cli.conf.xml.loader.Sm_XMLConfLoader
 
gConfOperators - Variable in class slib.tools.smltoolkit.sm.cli.conf.xml.loader.Sm_XMLConfLoader
 
gConfPairwise - Variable in class slib.tools.smltoolkit.sm.cli.conf.xml.loader.Sm_XMLConfLoader
 
gConfQueries - Variable in class slib.tools.smltoolkit.sm.cli.conf.xml.loader.Sm_XMLConfLoader
 
getAction(String) - Static method in class slib.tools.smltoolkit.sm.cli.core.utils.ActionParamsUtils
Try to associate an ActionsParams to the given String.
getBenchSize() - Method in class slib.tools.smltoolkit.sm.cli.conf.xml.loader.Sm_XMLConfLoader
 
getCachePairwiseResults() - Method in class slib.tools.smltoolkit.sm.cli.conf.xml.loader.Sm_XMLConfLoader
 
getGraph() - Method in class slib.tools.smltoolkit.sm.cli.core.SmCli
 
getiAccessor() - Method in class slib.tools.smltoolkit.sm.cli.core.SmCli
 
getICconf(String) - Method in class slib.tools.smltoolkit.sm.cli.core.SmCli
 
getId() - Method in class slib.tools.smltoolkit.sm.cli.core.utils.SMQueryParam
 
getInfile() - Method in class slib.tools.smltoolkit.sm.cli.core.utils.SMQueryParam
 
getJobSize() - Method in class slib.tools.smltoolkit.sm.cli.core.utils.calc.ThreadResultsQueryLoader
 
getNoAnnotAction() - Method in class slib.tools.smltoolkit.sm.cli.core.utils.SMQueryParam
 
getNoAnnotationScore() - Method in class slib.tools.smltoolkit.sm.cli.core.utils.SMQueryParam
 
getNoFoundAction() - Method in class slib.tools.smltoolkit.sm.cli.core.utils.SMQueryParam
 
getNoFoundScore() - Method in class slib.tools.smltoolkit.sm.cli.core.utils.SMQueryParam
 
getNumberQueries() - Method in class slib.tools.smltoolkit.sm.cli.core.utils.QueryConceptsIterator
 
getOutfile() - Method in class slib.tools.smltoolkit.sm.cli.core.utils.SMQueryParam
 
getSetValue(String) - Static method in class slib.tools.smltoolkit.sm.cli.core.utils.ActionParamsUtils
 
getSetValue() - Method in class slib.tools.smltoolkit.sm.cli.core.utils.calc.ThreadResultsQueryLoader
 
getSkipped() - Method in class slib.tools.smltoolkit.sm.cli.core.utils.calc.ThreadResultsQueryLoader
 
getSmconf() - Method in class slib.tools.smltoolkit.sm.cli.profile.go.SmProfileGOHandler
 
getSmconf() - Method in class slib.tools.smltoolkit.sm.cli.profile.mesh.SmProfileMeSHHandler
 
getType() - Method in class slib.tools.smltoolkit.sm.cli.core.utils.SMQueryParam
 
gmShortFlag - Variable in class slib.tools.smltoolkit.sm.cli.core.utils.SML_SM_module_XML_block_conf
 
graphURI - Variable in class slib.tools.smltoolkit.sm.cli.conf.xml.loader.Sm_XMLConfLoader
 
graphURI - Variable in class slib.tools.smltoolkit.sm.cli.core.utils.SML_SM_module_XML_block_conf
 

H

hasNext() - Method in class slib.tools.smltoolkit.sm.cli.core.utils.QueryConceptsIterator
 
help - Static variable in class slib.tools.smltoolkit.SmlToolKitCliCst
 

I

IC_ATTR - Static variable in class slib.tools.smltoolkit.sm.cli.conf.xml.utils.Sm_XML_Cst
 
IC_ATTR_VALUE_FULL_LIST - Static variable in class slib.tools.smltoolkit.sm.cli.conf.xml.utils.Sm_XML_Cst
Value to specify to compute measures using all loaded IC
IC_PROB - Static variable in class slib.tools.smltoolkit.sm.cli.conf.xml.utils.Sm_XML_Cst
 
IC_TAG - Static variable in class slib.tools.smltoolkit.sm.cli.conf.xml.utils.Sm_XML_Cst
 
ICS_TAG - Static variable in class slib.tools.smltoolkit.sm.cli.conf.xml.utils.Sm_XML_Cst
 
icShortFlag - Variable in class slib.tools.smltoolkit.sm.cli.core.utils.SML_SM_module_XML_block_conf
 
isOutputBaseName() - Method in class slib.tools.smltoolkit.sm.cli.core.utils.SMQueryParam
 
isQuiet() - Method in class slib.tools.smltoolkit.sm.cli.conf.xml.loader.Sm_XMLConfLoader
 
isUseLoadedURIprefixes() - Method in class slib.tools.smltoolkit.sm.cli.core.utils.SMQueryParam
 
isUseLoadedURIprefixesOutput() - Method in class slib.tools.smltoolkit.sm.cli.core.utils.SMQueryParam
 

M

main(String[]) - Static method in class slib.tools.smltoolkit.SmlToolKitCli
 
MEASURE_TAG - Static variable in class slib.tools.smltoolkit.sm.cli.conf.xml.utils.Sm_XML_Cst
 
MEASURES_TAG - Static variable in class slib.tools.smltoolkit.sm.cli.conf.xml.utils.Sm_XML_Cst
 
mtype - Variable in class slib.tools.smltoolkit.sm.cli.core.utils.SML_SM_module_XML_block_conf
 

N

next() - Method in class slib.tools.smltoolkit.sm.cli.core.utils.QueryConceptsIterator
 
nextValids(int) - Method in class slib.tools.smltoolkit.sm.cli.core.utils.QueryConceptsIterator
 
noAnnots - Variable in class slib.tools.smltoolkit.sm.cli.core.utils.SML_SM_module_XML_block_conf
 
notFound - Variable in class slib.tools.smltoolkit.sm.cli.core.utils.SML_SM_module_XML_block_conf
 
notrannots - Variable in class slib.tools.smltoolkit.sm.cli.core.utils.SML_SM_module_XML_block_conf
 
notrkr - Variable in class slib.tools.smltoolkit.sm.cli.core.utils.SML_SM_module_XML_block_conf
 

O

ontologyFormat - Variable in class slib.tools.smltoolkit.sm.cli.core.utils.SML_SM_module_XML_block_conf
 
ontologyPath - Variable in class slib.tools.smltoolkit.sm.cli.core.utils.SML_SM_module_XML_block_conf
 
OPT_BENCH_SIZE_ATTR - Static variable in class slib.tools.smltoolkit.sm.cli.conf.xml.utils.Sm_XML_Cst
 
OPT_CACHE_PAIRWISE_ATTR - Static variable in class slib.tools.smltoolkit.sm.cli.conf.xml.utils.Sm_XML_Cst
 
OPT_MODULE_TAG - Static variable in class slib.tools.smltoolkit.sm.cli.conf.xml.utils.Sm_XML_Cst
 
OPT_NO_ANNOTS_ATTR - Static variable in class slib.tools.smltoolkit.sm.cli.conf.xml.utils.Sm_XML_Cst
 
OPT_NOT_FOUND_ATTR - Static variable in class slib.tools.smltoolkit.sm.cli.conf.xml.utils.Sm_XML_Cst
 
OPT_QUIET_ATTR - Static variable in class slib.tools.smltoolkit.sm.cli.conf.xml.utils.Sm_XML_Cst
 
output - Variable in class slib.tools.smltoolkit.sm.cli.core.utils.SML_SM_module_XML_block_conf
 
OUTPUT_BASENAME_ATT - Static variable in class slib.tools.smltoolkit.sm.cli.conf.xml.utils.Sm_XML_Cst
 

P

PAIRWISE_MEASURE_ATTR - Static variable in class slib.tools.smltoolkit.sm.cli.conf.xml.utils.Sm_XML_Cst
 
PAIRWISE_MEASURE_ATTR_VALUE_FULL_LIST - Static variable in class slib.tools.smltoolkit.sm.cli.conf.xml.utils.Sm_XML_Cst
Value to specify to compute measures using all loaded IC
pmShortFlag - Variable in class slib.tools.smltoolkit.sm.cli.core.utils.SML_SM_module_XML_block_conf
 
prefixURI_Attr - Variable in class slib.tools.smltoolkit.sm.cli.core.utils.SML_SM_module_XML_block_conf
 
processArgs(String[]) - Method in class slib.tools.smltoolkit.sm.cli.core.cmd.SmCmdHandler
 
processArgs(String[]) - Method in class slib.tools.smltoolkit.sm.cli.profile.go.SmProfileGOHandler
 
processArgs(String[]) - Method in class slib.tools.smltoolkit.sm.cli.profile.mesh.SmProfileMeSHHandler
 
processArgs(String[]) - Method in class slib.tools.smltoolkit.SmlToolKitCli
 
profile - Variable in class slib.tools.smltoolkit.sm.cli.core.cmd.SmCmdHandler
 
properties_file_name - Static variable in class slib.tools.smltoolkit.SmlToolKitCst
See properties file and POM for constant values
properties_prefix - Static variable in class slib.tools.smltoolkit.sm.cli.core.utils.SmToolkitCst
 
properties_prefix - Static variable in class slib.tools.smltoolkit.sm.cli.profile.go.SmToolkitGOCst
 
properties_prefix - Static variable in class slib.tools.smltoolkit.sm.cli.profile.mesh.SmToolkitMeSHCst
 
properties_prefix - Static variable in class slib.tools.smltoolkit.SmlToolKitCst
 

Q

queries - Variable in class slib.tools.smltoolkit.sm.cli.core.utils.SML_SM_module_XML_block_conf
 
QUERIES_TAG - Static variable in class slib.tools.smltoolkit.sm.cli.conf.xml.utils.Sm_XML_Cst
 
QUERIES_TYPE_CTOC - Static variable in class slib.tools.smltoolkit.sm.cli.conf.xml.utils.Sm_XML_Cst
 
QUERIES_TYPE_CTOC_FULL - Static variable in class slib.tools.smltoolkit.sm.cli.conf.xml.utils.Sm_XML_Cst
 
QUERIES_TYPE_OTOO - Static variable in class slib.tools.smltoolkit.sm.cli.conf.xml.utils.Sm_XML_Cst
 
QUERY_TAG - Static variable in class slib.tools.smltoolkit.sm.cli.conf.xml.utils.Sm_XML_Cst
 
QueryConceptsIterator - Class in slib.tools.smltoolkit.sm.cli.core.utils
Utility used to iterate along the pairs of concepts which can be build according to the set of concepts (CLASS) composing the graph.
QueryConceptsIterator(Set<URI>) - Constructor for class slib.tools.smltoolkit.sm.cli.core.utils.QueryConceptsIterator
 
QUIET - Variable in class slib.tools.smltoolkit.sm.cli.core.SmCli
 
quiet - Variable in class slib.tools.smltoolkit.sm.cli.core.utils.SML_SM_module_XML_block_conf
 

S

setAnnotsFormat(String) - Method in class slib.tools.smltoolkit.sm.cli.core.utils.SML_SM_module_XML_block_conf
 
setAnnotsPath(String) - Method in class slib.tools.smltoolkit.sm.cli.core.utils.SML_SM_module_XML_block_conf
 
setAspect(String) - Method in class slib.tools.smltoolkit.sm.cli.core.utils.SML_SM_module_XML_block_conf
 
setFilter(String) - Method in class slib.tools.smltoolkit.sm.cli.core.utils.SML_SM_module_XML_block_conf
 
setGmShortFlag(String) - Method in class slib.tools.smltoolkit.sm.cli.core.utils.SML_SM_module_XML_block_conf
 
setGraphURI(String) - Method in class slib.tools.smltoolkit.sm.cli.core.utils.SML_SM_module_XML_block_conf
 
setIcShortFlag(String) - Method in class slib.tools.smltoolkit.sm.cli.core.utils.SML_SM_module_XML_block_conf
 
setInfile(String) - Method in class slib.tools.smltoolkit.sm.cli.core.utils.SMQueryParam
 
setJobSize(int) - Method in class slib.tools.smltoolkit.sm.cli.core.utils.calc.ThreadResultsQueryLoader
 
setMtype(String) - Method in class slib.tools.smltoolkit.sm.cli.core.utils.SML_SM_module_XML_block_conf
 
setNoAnnotAction(ActionsParams) - Method in class slib.tools.smltoolkit.sm.cli.core.utils.SMQueryParam
 
setNoAnnotationScore(double) - Method in class slib.tools.smltoolkit.sm.cli.core.utils.SMQueryParam
 
setNoAnnots(String) - Method in class slib.tools.smltoolkit.sm.cli.core.utils.SML_SM_module_XML_block_conf
 
setNoFoundAction(ActionsParams) - Method in class slib.tools.smltoolkit.sm.cli.core.utils.SMQueryParam
 
setNoFoundScore(double) - Method in class slib.tools.smltoolkit.sm.cli.core.utils.SMQueryParam
 
setNotFound(String) - Method in class slib.tools.smltoolkit.sm.cli.core.utils.SML_SM_module_XML_block_conf
 
setNoTR_Annots(String) - Method in class slib.tools.smltoolkit.sm.cli.core.utils.SML_SM_module_XML_block_conf
 
setNoTR_KR(String) - Method in class slib.tools.smltoolkit.sm.cli.core.utils.SML_SM_module_XML_block_conf
 
setOntologyFormat(String) - Method in class slib.tools.smltoolkit.sm.cli.core.utils.SML_SM_module_XML_block_conf
 
setOntologyPath(String) - Method in class slib.tools.smltoolkit.sm.cli.core.utils.SML_SM_module_XML_block_conf
 
setOutfile(String) - Method in class slib.tools.smltoolkit.sm.cli.core.utils.SMQueryParam
 
setOutput(String) - Method in class slib.tools.smltoolkit.sm.cli.core.utils.SML_SM_module_XML_block_conf
 
setOutputBaseName(boolean) - Method in class slib.tools.smltoolkit.sm.cli.core.utils.SMQueryParam
 
setPmShortFlag(String) - Method in class slib.tools.smltoolkit.sm.cli.core.utils.SML_SM_module_XML_block_conf
 
setPrefixURIAttribut(String) - Method in class slib.tools.smltoolkit.sm.cli.core.utils.SML_SM_module_XML_block_conf
 
setQueries(String) - Method in class slib.tools.smltoolkit.sm.cli.core.utils.SML_SM_module_XML_block_conf
 
setQuiet(String) - Method in class slib.tools.smltoolkit.sm.cli.core.utils.SML_SM_module_XML_block_conf
 
setSetValue(int) - Method in class slib.tools.smltoolkit.sm.cli.core.utils.calc.ThreadResultsQueryLoader
 
setSkipped(int) - Method in class slib.tools.smltoolkit.sm.cli.core.utils.calc.ThreadResultsQueryLoader
 
setThreads(String) - Method in class slib.tools.smltoolkit.sm.cli.core.utils.SML_SM_module_XML_block_conf
 
setType(String) - Method in class slib.tools.smltoolkit.sm.cli.core.utils.SMQueryParam
 
setUseLoadedURIprefixes(boolean) - Method in class slib.tools.smltoolkit.sm.cli.core.utils.SMQueryParam
 
setUseLoadedURIprefixesOutput(boolean) - Method in class slib.tools.smltoolkit.sm.cli.core.utils.SMQueryParam
 
simManager - Variable in class slib.tools.smltoolkit.sm.cli.core.SmCli
 
slib.tools.smltoolkit - package slib.tools.smltoolkit
 
slib.tools.smltoolkit.sm.cli.conf.xml.loader - package slib.tools.smltoolkit.sm.cli.conf.xml.loader
 
slib.tools.smltoolkit.sm.cli.conf.xml.utils - package slib.tools.smltoolkit.sm.cli.conf.xml.utils
 
slib.tools.smltoolkit.sm.cli.core - package slib.tools.smltoolkit.sm.cli.core
 
slib.tools.smltoolkit.sm.cli.core.cmd - package slib.tools.smltoolkit.sm.cli.core.cmd
 
slib.tools.smltoolkit.sm.cli.core.utils - package slib.tools.smltoolkit.sm.cli.core.utils
 
slib.tools.smltoolkit.sm.cli.core.utils.calc - package slib.tools.smltoolkit.sm.cli.core.utils.calc
 
slib.tools.smltoolkit.sm.cli.profile.go - package slib.tools.smltoolkit.sm.cli.profile.go
 
slib.tools.smltoolkit.sm.cli.profile.mesh - package slib.tools.smltoolkit.sm.cli.profile.mesh
 
Sm_XML_Cst - Class in slib.tools.smltoolkit.sm.cli.conf.xml.utils
 
Sm_XML_Cst() - Constructor for class slib.tools.smltoolkit.sm.cli.conf.xml.utils.Sm_XML_Cst
 
Sm_XMLConfLoader - Class in slib.tools.smltoolkit.sm.cli.conf.xml.loader
 
Sm_XMLConfLoader(String) - Constructor for class slib.tools.smltoolkit.sm.cli.conf.xml.loader.Sm_XMLConfLoader
 
SmCli - Class in slib.tools.smltoolkit.sm.cli.core
 
SmCli() - Constructor for class slib.tools.smltoolkit.sm.cli.core.SmCli
 
SmCmdHandler - Class in slib.tools.smltoolkit.sm.cli.core.cmd
 
SmCmdHandler() - Constructor for class slib.tools.smltoolkit.sm.cli.core.cmd.SmCmdHandler
 
SmCmdHandlerCst - Class in slib.tools.smltoolkit.sm.cli.core.cmd
 
SmCmdHandlerCst() - Constructor for class slib.tools.smltoolkit.sm.cli.core.cmd.SmCmdHandlerCst
 
SML_MODULE - Static variable in class slib.tools.smltoolkit.sm.cli.conf.xml.utils.Sm_XML_Cst
 
SML_SM - Static variable in class slib.tools.smltoolkit.sm.cli.conf.xml.utils.Sm_XML_Cst
 
SML_SM_include - Static variable in class slib.tools.smltoolkit.sm.cli.conf.xml.utils.Sm_XML_Cst
 
SML_SM_module_XML_block_conf - Class in slib.tools.smltoolkit.sm.cli.core.utils
 
SML_SM_module_XML_block_conf() - Constructor for class slib.tools.smltoolkit.sm.cli.core.utils.SML_SM_module_XML_block_conf
 
SML_TAG - Static variable in class slib.tools.smltoolkit.sm.cli.conf.xml.utils.Sm_XML_Cst
 
SmlModuleCLI - Interface in slib.tools.smltoolkit
 
SmlToolKitCli - Class in slib.tools.smltoolkit
Semantic Measures Library Toolkit Command Line Interface
SmlToolKitCli() - Constructor for class slib.tools.smltoolkit.SmlToolKitCli
 
SmlToolKitCliCst - Class in slib.tools.smltoolkit
 
SmlToolKitCliCst() - Constructor for class slib.tools.smltoolkit.SmlToolKitCliCst
 
SmlToolKitCst - Class in slib.tools.smltoolkit
Constant of the Semantic Framework Module
SmlToolKitCst() - Constructor for class slib.tools.smltoolkit.SmlToolKitCst
 
SmProfile_GO - Class in slib.tools.smltoolkit.sm.cli.profile.go
 
SmProfile_GO() - Constructor for class slib.tools.smltoolkit.sm.cli.profile.go.SmProfile_GO
 
SmProfile_MeSH - Class in slib.tools.smltoolkit.sm.cli.profile.mesh
 
SmProfile_MeSH() - Constructor for class slib.tools.smltoolkit.sm.cli.profile.mesh.SmProfile_MeSH
 
SmProfileGOCst - Class in slib.tools.smltoolkit.sm.cli.profile.go
 
SmProfileGOCst() - Constructor for class slib.tools.smltoolkit.sm.cli.profile.go.SmProfileGOCst
 
SmProfileGOHandler - Class in slib.tools.smltoolkit.sm.cli.profile.go
 
SmProfileGOHandler() - Constructor for class slib.tools.smltoolkit.sm.cli.profile.go.SmProfileGOHandler
 
SmProfileMeSHCst - Class in slib.tools.smltoolkit.sm.cli.profile.mesh
 
SmProfileMeSHCst() - Constructor for class slib.tools.smltoolkit.sm.cli.profile.mesh.SmProfileMeSHCst
 
SmProfileMeSHHandler - Class in slib.tools.smltoolkit.sm.cli.profile.mesh
 
SmProfileMeSHHandler(String[]) - Constructor for class slib.tools.smltoolkit.sm.cli.profile.mesh.SmProfileMeSHHandler
 
SMQueryParam - Class in slib.tools.smltoolkit.sm.cli.core.utils
 
SMQueryParam(String) - Constructor for class slib.tools.smltoolkit.sm.cli.core.utils.SMQueryParam
 
SmToolkitCst - Class in slib.tools.smltoolkit.sm.cli.core.utils
 
SmToolkitCst() - Constructor for class slib.tools.smltoolkit.sm.cli.core.utils.SmToolkitCst
 
SmToolkitGOCst - Class in slib.tools.smltoolkit.sm.cli.profile.go
 
SmToolkitGOCst() - Constructor for class slib.tools.smltoolkit.sm.cli.profile.go.SmToolkitGOCst
 
SmToolkitMeSHCst - Class in slib.tools.smltoolkit.sm.cli.profile.mesh
 
SmToolkitMeSHCst() - Constructor for class slib.tools.smltoolkit.sm.cli.profile.mesh.SmToolkitMeSHCst
 
SMutils - Class in slib.tools.smltoolkit.sm.cli.core.utils
 
SMutils() - Constructor for class slib.tools.smltoolkit.sm.cli.core.utils.SMutils
 

T

ThreadResultsQueryLoader - Class in slib.tools.smltoolkit.sm.cli.core.utils.calc
 
ThreadResultsQueryLoader(int) - Constructor for class slib.tools.smltoolkit.sm.cli.core.utils.calc.ThreadResultsQueryLoader
 
threads - Variable in class slib.tools.smltoolkit.sm.cli.core.utils.SML_SM_module_XML_block_conf
 
throwArithmeticCriticalException(SMconf, URI, URI, Object) - Static method in class slib.tools.smltoolkit.sm.cli.core.utils.SMutils
 
throwArithmeticCriticalException(SMconf, SMconf, URI, URI, Object) - Static method in class slib.tools.smltoolkit.sm.cli.core.utils.SMutils
 
tool - Variable in class slib.tools.smltoolkit.SmlToolKitCli
 
tool - Static variable in class slib.tools.smltoolkit.SmlToolKitCliCst
 
toolArg - Static variable in class slib.tools.smltoolkit.SmlToolKitCliCst
 
ToolName_SM - Static variable in class slib.tools.smltoolkit.SmlToolKitCliCst
 
toString() - Method in class slib.tools.smltoolkit.sm.cli.core.utils.SMQueryParam
 
TYPE_VALUE_GROUPWISE - Static variable in class slib.tools.smltoolkit.sm.cli.conf.xml.utils.Sm_XML_Cst
 
TYPE_VALUE_PAIRWISE - Static variable in class slib.tools.smltoolkit.sm.cli.conf.xml.utils.Sm_XML_Cst
 

U

USE_URI_PREFIX_ATTR - Static variable in class slib.tools.smltoolkit.sm.cli.conf.xml.utils.Sm_XML_Cst
 
USE_URI_PREFIX_OUTPUT_ATTR - Static variable in class slib.tools.smltoolkit.sm.cli.conf.xml.utils.Sm_XML_Cst
 

V

valueOf(String) - Static method in enum slib.tools.smltoolkit.sm.cli.core.utils.ActionsParams
Returns the enum constant of this type with the specified name.
values() - Static method in enum slib.tools.smltoolkit.sm.cli.core.utils.ActionsParams
Returns an array containing the constants of this enum type, in the order they are declared.
version - Static variable in class slib.tools.smltoolkit.SmlToolKitCliCst
 

W

writeToFile(String, String) - Static method in class slib.tools.smltoolkit.sm.cli.core.utils.FileWriterUtil
 

X

xmlconf - Variable in class slib.tools.smltoolkit.sm.cli.profile.go.SmProfile_GO
 
xmlconf - Variable in class slib.tools.smltoolkit.sm.cli.profile.mesh.SmProfile_MeSH
 
xmlConfAsString - Variable in class slib.tools.smltoolkit.sm.cli.core.cmd.SmCmdHandler
 
xmlConfFile - Variable in class slib.tools.smltoolkit.sm.cli.core.cmd.SmCmdHandler
 
XMLConfUtils - Class in slib.tools.smltoolkit.sm.cli.core.utils
 
XMLConfUtils() - Constructor for class slib.tools.smltoolkit.sm.cli.core.utils.XMLConfUtils
 

_

_appCmdName - Static variable in class slib.tools.smltoolkit.SmlToolKitCliCst
 
_debugMode - Static variable in class slib.tools.smltoolkit.SmlToolKitCliCst
 
_help - Static variable in class slib.tools.smltoolkit.sm.cli.core.cmd.SmCmdHandlerCst
 
_optionsOrder - Static variable in class slib.tools.smltoolkit.SmlToolKitCliCst
 
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