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GO_BFS - Class in slib.examples.sglib.traversal
Basic example which shows how to perform a Breadth-First Search on the Gene Ontology.
GO_BFS() - Constructor for class slib.examples.sglib.traversal.GO_BFS
 
GraphExample - Class in slib.examples.sml.general
Snippet of code showing how to interact with the graph, i.e.
GraphExample() - Constructor for class slib.examples.sml.general.GraphExample
 

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main(String[]) - Static method in class slib.examples.sglib.traversal.GO_BFS
 
main(String[]) - Static method in class slib.examples.sml.general.GraphExample
 
main(String[]) - Static method in class slib.examples.sml.general.SMComputation
 
main(String[]) - Static method in class slib.examples.sml.go.SMComputationGO_extrinsic_IC
 
main(String[]) - Static method in class slib.examples.sml.go.SMComputationGO_groupwise
 
main(String[]) - Static method in class slib.examples.sml.go.SMComputationGO_groupwise_million
 
main(String[]) - Static method in class slib.examples.sml.go.SMComputationGO_pairwise
 
main(String[]) - Static method in class slib.examples.sml.go.SMComputationGO_pairwise_edge_based
 
main(String[]) - Static method in class slib.examples.sml.mesh.MeSHExample_XML
 
main(String[]) - Static method in class slib.examples.sml.mesh.MeSHExample_XML_2013
 
main(String[]) - Static method in class slib.examples.sml.owl.SMComputationOWL
 
main(String[]) - Static method in class slib.examples.sml.snomedct.SMComputationSnomedCT
 
main(String[]) - Static method in class slib.examples.sml.wordnet.WordnetExample
 
main(String[]) - Static method in class slib.examples.sml.yago.SMComputationYago
 
MeSHExample_XML - Class in slib.examples.sml.mesh
 
MeSHExample_XML() - Constructor for class slib.examples.sml.mesh.MeSHExample_XML
 
MeSHExample_XML_2013 - Class in slib.examples.sml.mesh
 
MeSHExample_XML_2013() - Constructor for class slib.examples.sml.mesh.MeSHExample_XML_2013
 

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removeMeshCycles(G) - Static method in class slib.examples.sml.mesh.MeSHExample_XML_2013
Remove the cycles from the MeSH Graph see http://semantic-measures-library.org/sml/index.php?q=doc&page=mesh for more information

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slib.examples.sglib.traversal - package slib.examples.sglib.traversal
 
slib.examples.sml.general - package slib.examples.sml.general
 
slib.examples.sml.go - package slib.examples.sml.go
 
slib.examples.sml.mesh - package slib.examples.sml.mesh
 
slib.examples.sml.owl - package slib.examples.sml.owl
 
slib.examples.sml.snomedct - package slib.examples.sml.snomedct
 
slib.examples.sml.wordnet - package slib.examples.sml.wordnet
 
slib.examples.sml.yago - package slib.examples.sml.yago
 
SMComputation - Class in slib.examples.sml.general
Example of a Semantic measure computation using the Semantic Measures Library.
SMComputation() - Constructor for class slib.examples.sml.general.SMComputation
 
SMComputationGO_extrinsic_IC - Class in slib.examples.sml.go
Example which shows how to use the Semantic Measures Library to compute the Information Content (IC) of Gene Ontology terms using an Extrinsic IC (e.g.
SMComputationGO_extrinsic_IC() - Constructor for class slib.examples.sml.go.SMComputationGO_extrinsic_IC
 
SMComputationGO_groupwise - Class in slib.examples.sml.go
Example of a Semantic measure computation using the Semantic Measures Library.
SMComputationGO_groupwise() - Constructor for class slib.examples.sml.go.SMComputationGO_groupwise
 
SMComputationGO_groupwise_million - Class in slib.examples.sml.go
Example of a Semantic measure computation using the Semantic Measures Library.
SMComputationGO_groupwise_million() - Constructor for class slib.examples.sml.go.SMComputationGO_groupwise_million
 
SMComputationGO_pairwise - Class in slib.examples.sml.go
Example of a Semantic measure computation using the Semantic Measures Library.
SMComputationGO_pairwise() - Constructor for class slib.examples.sml.go.SMComputationGO_pairwise
 
SMComputationGO_pairwise_edge_based - Class in slib.examples.sml.go
Example of a Semantic measure computation using the Semantic Measures Library.
SMComputationGO_pairwise_edge_based() - Constructor for class slib.examples.sml.go.SMComputationGO_pairwise_edge_based
 
SMComputationOWL - Class in slib.examples.sml.owl
 
SMComputationOWL() - Constructor for class slib.examples.sml.owl.SMComputationOWL
 
SMComputationSnomedCT - Class in slib.examples.sml.snomedct
Example of a Semantic measure computation using the Semantic Measures Library.
SMComputationSnomedCT() - Constructor for class slib.examples.sml.snomedct.SMComputationSnomedCT
 
SMComputationYago - Class in slib.examples.sml.yago
 
SMComputationYago() - Constructor for class slib.examples.sml.yago.SMComputationYago
 

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WordnetExample - Class in slib.examples.sml.wordnet
Simple example which how to take advantage of the Semantic Measures Library to compute the semantic similarity of two nouns defined in WordNet 3.1 Documentation: http://www.semantic-measures-library.org
WordnetExample() - Constructor for class slib.examples.sml.wordnet.WordnetExample
 
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