public class SMComputationGO_groupwise
extends Object
Example of a Semantic measure computation using the Semantic Measures
Library. In this snippet we estimate the similarity of two genes annotated by
concepts (terms) defined in the Gene Ontology. The Gene Ontology is expressed
in OBO format. The similarity is estimated using an indirect groupwise
measure based on: Lin's pairwise measure, Best Match Average aggregation
strategy.
More information at http://www.semantic-measures-library.org/
Note that you can set the LOG level in specified in log4j.xml, e.g. in root
element, change value="INFO" to value="DEBUG"
- Author:
- Sébastien Harispe