public class EvidenceCodeRules
extends Object
Evidence codes are not statements of the quality of the annotation. Within
each evidence code classification, some methods produce annotations of higher
confidence or greater specificity than other methods, in addition the way in
which a technique has been applied or interpreted in a paper will also affect
the quality of the resulting annotation. Thus evidence codes cannot be used
as a measure of the quality of the annotation.
The EXP code is the parent code for the IDA, IPI, IMP, IGI and IEP
experimental codes. Experimental Evidence Codes
EXP: Inferred from Experiment -- IDA: Inferred from Direct Assay -- IPI:
Inferred from Physical Interaction -- IMP: Inferred from Mutant Phenotype --
IGI: Inferred from Genetic Interaction -- IEP: Inferred from Expression
Pattern
Computational Analysis Evidence Codes ISS: Inferred from Sequence or
Structural Similarity -- ISO: Inferred from Sequence Orthology -- ISA:
Inferred from Sequence Alignment -- ISM: Inferred from Sequence Model
IGC: Inferred from Genomic Context IBA: Inferred from Biological aspect of
Ancestor IBD: Inferred from Biological aspect of Descendant IKR: Inferred
from Key Residues IRD: Inferred from Rapid Divergence RCA: inferred from
Reviewed Computational Analysis
IEA: Inferred from Electronic Annotation
Author Statement Evidence Codes TAS: Traceable Author Statement NAS:
Non-traceable Author Statement
Curator Statement Evidence Codes IC: Inferred by Curator ND: No biological
Data available
- Author:
- Sébastien Harispe