slib.graph.io.loader.bio.obo.utils

Class OboTerm

java.lang.Object

slib.graph.io.loader.bio.obo.utils.OboTerm

public class OboTerm
extends Object

Author:

Sébastien Harispe

Constructor Summary

Constructors

Constructor and Description
OboTerm()
OboTerm(String uri)

Method Summary

Methods

Modifier and Type	Method and Description
void	addRel(String relType, String targetId)
List<OboRelationship>	getRelationships()
String	getURIstring()
boolean	isObsolete()
void	setObsolete(boolean isObsolete)
void	setRelationships(ArrayList<OboRelationship> relationships)
void	setURIstring(String uri)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

OboTerm

public OboTerm(String uri)

Parameters:

uri -

OboTerm

public OboTerm()

Method Detail

addRel

public void addRel(String relType,
          String targetId)

Parameters:

relType -

targetId -

getRelationships

public List<OboRelationship> getRelationships()

Returns:

the relationships associated to the term.

getURIstring

public String getURIstring()

Returns:

the URI (as String) associated to the term.

setURIstring

public void setURIstring(String uri)

Parameters:

uri -

setRelationships

public void setRelationships(ArrayList<OboRelationship> relationships)

Parameters:

relationships -

isObsolete

public boolean isObsolete()

Returns:

true if the term is specified as obsolete.

setObsolete

public void setObsolete(boolean isObsolete)

Parameters:

isObsolete -