slib.indexer.obo

Class IndexerOBO

java.lang.Object

slib.indexer.obo.IndexerOBO

public class IndexerOBO
extends Object

Class used to build an index for the terms specified in an OBO ontology

Author:

Sébastien Harispe

Constructor Summary

Constructors

Constructor and Description
IndexerOBO()

Method Summary

Methods

Modifier and Type	Method and Description
static IndexHash	buildIndex(URIFactory factory, String filepath, String defaultNamespace) Build an index for the terms specified in an OBO ontology.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

IndexerOBO

public IndexerOBO()

Method Detail

buildIndex

public static IndexHash buildIndex(URIFactory factory,
                   String filepath,
                   String defaultNamespace)
                            throws SLIB_Exception

Build an index for the terms specified in an OBO ontology. Each term will be associated to its name.

Parameters:

factory - the URI factory which will be used to generate the URIs

filepath - the path to the ontology file

defaultNamespace - the default namespace used to generate the URIs

Returns:

the index

Throws:

SLIB_Exception